These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence [CGTGATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAGCCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTTCGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCATTTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAGCCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTGTACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGCGAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACCCGACCGCCTGTCAAACCGCACCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCCCGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCA] [+] EMBL BX625556 [CGTGATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAGCCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTTCGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCATTTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAGCCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTGTACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGCGAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACCCGACCGCCTGTCAAACCGCACCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCCCGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCA] consensusID : consensus_1654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [ATCGCCGAGGTTAACGAGGTCCATCACGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTANAGAGGGTTGCGGTCCTATTTCCACCAACCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCATGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTATGTCGACGGTCTAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTAGATTTCAGCTCAGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGGTGCATGCGGCTAATGCCCCGTGGTGAGAGATGTCTTCGACCGGAGCAGAACCGTTCAGCCGTGTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACACACTAGCAGGAC] [+] EMBL AL933152 [ATCGCCGAGGTTAACGAGGTCCATCACGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTANAGAGGGTTGCGGTCCTATTTCCACCAACCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCATGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTATGTCGACGGTCTAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTAGATTTCAGCTCAGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGGTGCATGCGGCTAATGCCCCGTGGTGAGAGATGTCTTCGACCGGAGCAGAACCGTTCAGCCGTGTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACACACTAGCAGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1654#0 --CGT-GATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAG 57 consensus_1654#1 ATCGCCGAGGTTAACGAGGTCCA---TCACGATGACACCGATGTCGAGC---------AG 48 ** ** *** **** * ** ** **** * ** ** * ** consensus_1654#0 CCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTT 117 consensus_1654#1 CCGACT--ATGGTAATCGGGACGCGGCT-CTANAGAGG------GTTGCGGTCCTATTTC 99 ** ** * * * *** **** * * **** * ** * * * consensus_1654#0 CGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCAT 177 consensus_1654#1 CACCAAC-CAAATTTGCTACCCAGCTCAGGGAAAATTGTCAG-CAGCTTCAAAGAACAGC 157 * *** * * * *** *** * *** *** * *** * ** consensus_1654#0 TTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAG 237 consensus_1654#1 GCAAAAATGTTGCTTCAA-AAGTTGGGCGCCCCTGTC---CCTCCCTCCTTCTTGG--AA 211 * ** ** *** *** ***** * * * * * ** * ** * consensus_1654#0 CCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTG 297 consensus_1654#1 GTGGCTGACACCGTATGACTCCGAAAGCG----TACCGGGAACTGTCACAAGGGG----- 262 ** ** * ** ** *** ** ** ** ** *** consensus_1654#0 TACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGC 357 consensus_1654#1 -ACCA-TGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTAT-GTCGACGGT--C 317 *** *** * * * * * * ** *** ** * * **** * consensus_1654#0 GAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACC 417 consensus_1654#1 TAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTA--GATTTCAGCTC 375 * ** * *** **** * * ** * * * * ** * * consensus_1654#0 CGACCGCCTGTCAAACCGCA-CCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCC 476 consensus_1654#1 AGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGG-TGCATGCGG-CT 433 * *** *** * ** * * * * ***** * * **** *** *** * consensus_1654#0 CGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGA 536 consensus_1654#1 AATGCCCC----GTGGTGAGAGAT-----GTCTTCGACCGGAGCAGAACCGTTCAGCCGT 484 * **** * * ** ** ** *** * * ** ****** consensus_1654#0 CTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATT 596 consensus_1654#1 GTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACA----CACTAGCAGGAC- 539 * * ** * * ** *** * ** *** * *** * * * consensus_1654#0 TGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTT 656 consensus_1654#1 ------------------------------------------------------------ consensus_1654#0 CAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTC 716 consensus_1654#1 ------------------------------------------------------------ consensus_1654#0 CGAAAGCGTACCGGGAACTGTCACAAGGGGACCA 750 consensus_1654#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||