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Anopheles gambiae
cluster # 1654 cluster # 1654       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1654#0 length = 750 sequences # 1  
consensus_1654#1 length = 539 sequences # 1  

consensusID : consensus_1654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 750
fasta sequence
                              [CGTGATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAGCCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTTCGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCATTTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAGCCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTGTACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGCGAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACCCGACCGCCTGTCAAACCGCACCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCCCGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCA]

[+] EMBL BX625556             [CGTGATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAGCCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTTCGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCATTTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAGCCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTGTACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGCGAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACCCGACCGCCTGTCAAACCGCACCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCCCGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCA]


>consensus_1654#0 CGTGATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAGCCT GCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTTCGC CATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCATTTA CGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAGCCA GCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTGTAC CGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGCGAA TCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACCCGA CCGCCTGTCAAACCGCACCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCCCGTA CCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGACTAT GGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATTTGCT ACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAA AGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAA AGCGTACCGGGAACTGTCACAAGGGGACCA



consensusID : consensus_1654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence
                              [ATCGCCGAGGTTAACGAGGTCCATCACGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTANAGAGGGTTGCGGTCCTATTTCCACCAACCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCATGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTATGTCGACGGTCTAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTAGATTTCAGCTCAGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGGTGCATGCGGCTAATGCCCCGTGGTGAGAGATGTCTTCGACCGGAGCAGAACCGTTCAGCCGTGTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACACACTAGCAGGAC]

[+] EMBL AL933152             [ATCGCCGAGGTTAACGAGGTCCATCACGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTANAGAGGGTTGCGGTCCTATTTCCACCAACCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCATGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTATGTCGACGGTCTAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTAGATTTCAGCTCAGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGGTGCATGCGGCTAATGCCCCGTGGTGAGAGATGTCTTCGACCGGAGCAGAACCGTTCAGCCGTGTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACACACTAGCAGGAC]


>consensus_1654#1 ATCGCCGAGGTTAACGAGGTCCATCACGATGACACCGATGTCGAGCAGCCGACTATGGTA ATCGGGACGCGGCTCTANAGAGGGTTGCGGTCCTATTTCCACCAACCAAATTTGCTACCC AGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTT GGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCG TACCGGGAACTGTCACAAGGGGACCATGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAG CCCTTATGTCGACGGTCTAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGA ATTAGATTTCAGCTCAGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGC GGTGCATGCGGCTAATGCCCCGTGGTGAGAGATGTCTTCGACCGGAGCAGAACCGTTCAG CCGTGTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACACACTAGCAGGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1654#0      --CGT-GATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAG 57
consensus_1654#1      ATCGCCGAGGTTAACGAGGTCCA---TCACGATGACACCGATGTCGAGC---------AG 48
                        **  ** *** **** *  **   **    ****   * ** **  *         **

consensus_1654#0      CCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTT 117
consensus_1654#1      CCGACT--ATGGTAATCGGGACGCGGCT-CTANAGAGG------GTTGCGGTCCTATTTC 99
                      **  **  * *      * *** ****  * *  ****      *  ** * *     * 

consensus_1654#0      CGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCAT 177
consensus_1654#1      CACCAAC-CAAATTTGCTACCCAGCTCAGGGAAAATTGTCAG-CAGCTTCAAAGAACAGC 157
                      * *** * * *    ***  *** *   ***        *** * ***  *   **    

consensus_1654#0      TTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAG 237
consensus_1654#1      GCAAAAATGTTGCTTCAA-AAGTTGGGCGCCCCTGTC---CCTCCCTCCTTCTTGG--AA 211
                        *    ** **   ***   ***  ***** *  *    *  * * **  *  **  * 

consensus_1654#0      CCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTG 297
consensus_1654#1      GTGGCTGACACCGTATGACTCCGAAAGCG----TACCGGGAACTGTCACAAGGGG----- 262
                         ** **     *    ** **   ***     ** **  ** **     ***      

consensus_1654#0      TACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGC 357
consensus_1654#1      -ACCA-TGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTAT-GTCGACGGT--C 317
                       ***  *** * * *     *      *    *  **  ***   ** * *  ****  *

consensus_1654#0      GAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACC 417
consensus_1654#1      TAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTA--GATTTCAGCTC 375
                       *     **  *   *** ****   * *   **    * *  *     *   ** *  *

consensus_1654#0      CGACCGCCTGTCAAACCGCA-CCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCC 476
consensus_1654#1      AGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGG-TGCATGCGG-CT 433
                       *  *** ***  * ** *   * *  *  ***** *   *  ****  ***  *** * 

consensus_1654#0      CGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGA 536
consensus_1654#1      AATGCCCC----GTGGTGAGAGAT-----GTCTTCGACCGGAGCAGAACCGTTCAGCCGT 484
                        * ****    * *   **  **      **  ***    * *     **  ****** 

consensus_1654#0      CTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATT 596
consensus_1654#1      GTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACA----CACTAGCAGGAC- 539
                       * * **  *    * ** ***      * **     ***  *    *** * *   *  

consensus_1654#0      TGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTT 656
consensus_1654#1      ------------------------------------------------------------
                                                                                  

consensus_1654#0      CAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTC 716
consensus_1654#1      ------------------------------------------------------------
                                                                                  

consensus_1654#0      CGAAAGCGTACCGGGAACTGTCACAAGGGGACCA 750
consensus_1654#1      ----------------------------------
                                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)