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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[CCGCGAATGGCGAATGTTGAAAGAGACGACAACATGTTGAATGAAGAGCAAGAATCGTCCCAATCCAACAGCAGCAATGGTTCAAGCAGTGTGGTGCAACCATCCAGCTTCCAGCTGAAATCAAGCGTCCTTAGACAGTCTACCTTTGGCGGATCTGCGTTCCTTGGGGGAGGTGGTTCTTCATCGAGCAACAGCATATCGTCCTCGCCATCCCTAGCCGGCTTTGTCGGCGGTAATGCTGGCTTGGCAAACAGCTTCAACCTGAAACCAAGCGTGCTGAAACCATCACAGCTATCGTTTGGCGGAATCGGAAGCATCAAAGAAGGTAACGGTGCGGCTGCAGATAAGAATGGTAACGATGCCGTCGCACCGGCCCCTACAAATCCCTTCCTGAAGACGCAGTTCAGCGAGGATGAACCATCGGATGCGGATGCAAAGGGTGGCTCGGCGGAAAGTAGCAAATCGGCAACGGACAAGGATGGCGACAACAGTACGAACAGCAACAATATCGATCCTTTGGCAAAGCTGAAAAGTGCCTCCCTGCCGAAGTCGAACCTTTTCGCGAATGTGAAAAAATCGACGCTGAGCGAAGCGTCGTGCGGATTTGTGTTTGGCCAAAATGTCCACGAACGTGTGACGGGTGAAAATCTTAGCAACGCCAGTGCCAACACTCTTCCAACCACT]
[+] EMBL BM607008 [CCGCGAATGGCGAATGTTGAAAGAGACGACAACATGTTGAATGAAGAGCAAGAATCGTCCCAATCCAACAGCAGCAATGGTTCAAGCAGTGTGGTGCAACCATCCAGCTTCCAGCTGAAATCAAGCGTCCTTAGACAGTCTACCTTTGGCGGATCTGCGTTCCTTGGGGGAGGTGGTTCTTCATCGAGCAACAGCATATCGTCCTCGCCATCCCTAGCCGGCTTTGTCGGCGGTAATGCTGGCTTGGCAAACAGCTTCAACCTGAAACCAAGCGTGCTGAAACCATCACAGCTATCGTTTGGCGGAATCGGAAGCATCAAAGAAGGTAACGGTGCGGCTGCAGATAAGAATGGTAACGATGCCGTCGCACCGGCCCCTACAAATCCCTTCCTGAAGACGCAGTTCAGCGAGGATGAACCATCGGATGCGGATGCAAAGGGTGGCTCGGCGGAAAGTAGCAAATCGGCAACGGACAAGGATGGCGACAACAGTACGAACAGCAACAATATCGATCCTTTGGCAAAGCTGAAAAGTGCCTCCCTGCCGAAGTCGAACCTTTTCGCGAATGTGAAAAAATCGACGCTGAGCGAAGCGTCGTGCGGATTTGTGTTTGGCCAAAATGTCCACGAACGTGTGACGGGTGAAAATCTTAGCAACGCCAGTGCCAACACTCTTCCAACCACT]
consensusID : consensus_1668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[AGGCAAGAATCNGCACGTTGGATCGATCCTTTGGCAAGCTGNNAAAGTGCCTCCCTGCCGAAGTCGAACCTTTTCGCGAATGTGAAAAAATCGACGCTGAGCGAAGCGTCGTGCGGATTTGTGTTTGGCCAAAATGTCCACGAACGTGTGACGGGTGAAAATCTTAGCAACGCCAGTGCCAACACTCTTCCAACCACTGGCTTTTCATTCGCCACAAGCGTAGCGGCAACAGCGGGCGAAAGTGGTACGGGTGGAGCGGGGGGCAATACAGCTAACACAGCTTCGTCGAACGCTTCCGGCACCGCAACCGGCAAGGATGGGTCCGACTCTTCGGATGGCAGCAGCCGGGAGCCAAAGGATCGCGAAAGTCTGGAGGAAGCTGCCCGCCGCTATGAGGAAAGCCGGGGAGCACTGAAACGCAAGTACGAAGAGGTCGAGACCATCACTGGCGAANGAGGACGAACGGAACGTGGTCGAAATTACATTGCAAGCTGTNTGCGTTCGCCAAGTCGAACTGGGAGGAGCGTGGTCACGGGCACGCTGCGACTTACTGA]
[+] EMBL BX467137 [AGGCAAGAATCNGCACGTTGGATCGATCCTTTGGCAAGCTGNNAAAGTGCCTCCCTGCCGAAGTCGAACCTTTTCGCGAATGTGAAAAAATCGACGCTGAGCGAAGCGTCGTGCGGATTTGTGTTTGGCCAAAATGTCCACGAACGTGTGACGGGTGAAAATCTTAGCAACGCCAGTGCCAACACTCTTCCAACCACTGGCTTTTCATTCGCCACAAGCGTAGCGGCAACAGCGGGCGAAAGTGGTACGGGTGGAGCGGGGGGCAATACAGCTAACACAGCTTCGTCGAACGCTTCCGGCACCGCAACCGGCAAGGATGGGTCCGACTCTTCGGATGGCAGCAGCCGGGAGCCAAAGGATCGCGAAAGTCTGGAGGAAGCTGCCCGCCGCTATGAGGAAAGCCGGGGAGCACTGAAACGCAAGTACGAAGAGGTCGAGACCATCACTGGCGAANGAGGACGAACGGAACGTGGTCGAAATTACATTGCAAGCTGTNTGCGTTCGCCAAGTCGAACTGGGAGGAGCGTGGTCACGGGCACGCTGCGACTTACTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1668#0 CCGCGAATGGCGAATGTTGAAAGAGACGACAACATGTTGAATGAAGAGCAAGAATCGTCC 60
consensus_1668#1 ------------------------------------------------------------
consensus_1668#0 CAATCCAACAGCAGCAATGGTTCAAGCAGTGTGGTGCAACCATCCAGCTTCCAGCTGAAA 120
consensus_1668#1 -------------------------------AGGCAAGAATCNGCACGTTGGATCGATCC 29
** * ** ** * *
consensus_1668#0 TCAAGCGTCCTTAGACAGTCTACCTTTGGCGGATCTGCGTTCCTTGGGGGAGGTGGTTCT 180
consensus_1668#1 TTTGGCAAGCTGNNAAAGTGCCTCCCTGCCGAAGTCGAACCTTTTCGCGAATGTGAAAA- 88
* ** ** * *** * ** ** * * ** * * * ***
consensus_1668#0 TCATCGAGCAACAGCATATCGTCCTCGCCATCCCTAGCCGGCTTTGTCGGCGGT-AATGC 239
consensus_1668#1 -AATCGACGCTGAGCGAAGCGTCGTGCGGATTTGTGTTTGGCCAAAATGTCCACGAACGT 147
***** *** * **** * ** * *** * * ** *
consensus_1668#0 TGGCTTGGCAAACAGCTT--CAAC-CTGAAACCAAGCGTGCTGAAACCATCACAGCTATC 296
consensus_1668#1 GTGACGGGTGAAAATCTTAGCAACGCCAGTGCCAACACTCTTCCAACCACTG-GCTTTTC 206
* ** ** * *** **** * **** * * ***** * **
consensus_1668#0 GTTTGGCGGAATCGGAAGCATCAAAGAAGGTAACGGTGCGGCTGCAGATAAGAATGGTAA 356
consensus_1668#1 ATTCGCCACAAGCGTAGCGGCAACAGCGGGCGAAAGT---GGTACGGGTGGAGCGGGGGG 263
** * * ** ** * * ** ** * ** * * * * * **
consensus_1668#0 CGATGCCGTCGCACCGGCCCCTACAAATCCCTTCCTGAAGACGCAGTTCAGCGAGGATGA 416
consensus_1668#1 CAATACAGCTAACACAGCTTCGTCGAACGC--TTCCGGCACCGCAAC-CGGCAAGGATGG 320
* ** * * * ** * * ** * * * * **** * ** ******
consensus_1668#0 ACCATCGGATGCGGATGCAAAGGGTGGCTCGGCGGAAAGTAGCAAATCGGCAACGGACAA 476
consensus_1668#1 GT---------CCGACTCTTCGGATGG--CAGCAGCCGGGAGCCAA--AGGATCGCGAAA 367
* ** * ** *** * ** * * *** ** * * ** **
consensus_1668#0 GGATGGCGACAACAGTACGAACAGCAACAATATCGATCCTTTGGCAAAGCTGAAAAGTGC 536
consensus_1668#1 GTCTGGAGGAAGCTGCCCG-----CCGCTATGAGGAAAGCCGGGGAGCACTGAAACGCAA 422
* *** * * * * ** * * ** ** ** * ****** *
consensus_1668#0 CTCCCTGCCGAAGTCGAACCTTTTCGCGAATGTGAAAAAATCGACGCTGAGCGAAGCGTC 596
consensus_1668#1 GTAC--GAAGAGGTCGAGACCATCACTG---GCGAANGAG-----GACGAACGGAACGTG 472
* * * ** ***** * * * * *** * * ** ** * ***
consensus_1668#0 GTGCGGATTTGTGTTTGGCCAAAATGTCCACGAACGTGTGACGGGTGAAAATCTTAGCAA 656
consensus_1668#1 GT-CGAAATTACATTG---CAAGCTGTNTG----CGTTCGCCAAGTCGAACTGGGAGGAG 524
** ** * ** ** *** *** *** * * ** ** * ** *
consensus_1668#0 CGCCAGTGCCAACACTCTTCCAACCACT-- 684
consensus_1668#1 CGTGGTCACGGGCACGCTGCGACTTACTGA 554
** * *** ** * * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||