These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [GGCAGAATCCCCACGATTAGAAAGTAGGATGAACCAGCTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCTGAGACACCAAGGGCAAGATTTATTGAGACTGATCTTCAGTTGATTTTACAACGACGGATGAGAAAAAGCCCCTTCGAACACTAAACATCCAAATACCAACCAAACTGTTAAGACATGCTTTCAAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATANTTCAAAGAGCTATGGAGGAAANTTNAANAAAACTCCACCGATTTGNATAACCATGAGTTCAAACAAACAATAAACCATAAAACNATGATCAATTAACCATCAATAACGAAAGATGTAATATNATAACGACCAGGGAACACCCTTTTGCAGACCGGTCAATAACAGGAAATCANATAAGCTTACCAAGGGTGGGTTGCATGAAGCCTGACANATTAACAACGATTNTTAACATTCGGCCGACTTTGGAACCATACCACAATGTGTGTCACACACACTCGCTCCGCGGAAACGGCTGGCTCGATCAAGGTCTCATCNACATTCCCTTCTACTAACTACNATAGCCCCNNAGT] [+] EMBL AL693410 [GGCAGAATCCCCACGATTAGAAAGTAGGATGAACCAGCTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCTGAGACACCAAGGGCAAGATTTATTGAGACTGATCTTCAGTTGATTTTACAACGACGGATGAGAAAAAGCCCCTTCGAACACTAAACATCCAAATACCAACCAAACTGTTAAGACATGCTTTCAAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATANTTCAAAGAGCTATGGAGGAAANTTNAANAAAACTCCACCGATTTGNATAACCATGAGTTCAAACAAACAATAAACCATAAAACNATGATCAATTAACCATCAATAACGAAAGATGTAATATNATAACGACCAGGGAACACCCTTTTGCAGACCGGTCAATAACAGGAAATCANATAAGCTTACCAAGGGTGGGTTGCATGAAGCCTGACANATTAACAACGATTNTTAACATTCGGCCGACTTTGGAACCATACCACAATGTGTGTCACACACACTCGCTCCGCGGAAACGGCTGGCTCGATCAAGGTCTCATCNACATTCCCTTCTACTAACTACNATAGCCCCNNAGT] consensusID : consensus_1669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CAACACCCAACGGATGGAAATAATAAACAAGGAAAAATCTGATAACGAGGAAAAATTGTGTCACAATCATCATCTTGTTATTCAATCAATGTAAGGACATGCGACGGACAATGGCAATGGGAAGGAATCTACAAAAAAGGAAAAAAAAATTGAGACGTTTTTCGAAGAAAAGTAAGGATGAACCAGTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCCGAGACACCAAGGGCAAGATTTATGAGAATGATCTTCAGTTGATTTACAACGACGATGAGAAAGCCCTCGAACACTAACATCCAAATACCAACAAACTGTTAAGACATGCTTTCAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATATTAAAGAGCTATG] [+] EMBL BX617377 [CAACACCCAACGGATGGAAATAATAAACAAGGAAAAATCTGATAACGAGGAAAAATTGTGTCACAATCATCATCTTGTTATTCAATCAATGTAAGGACATGCGACGGACAATGGCAATGGGAAGGAATCTACAAAAAAGGAAAAAAAAATTGAGACGTTTTTCGAAGAAAAGTAAGGATGAACCAGTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATCCAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAACAGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTCCGAGACACCAAGGGCAAGATTTATGAGAATGATCTTCAGTTGATTTACAACGACGATGAGAAAGCCCTCGAACACTAACATCCAAATACCAACAAACTGTTAAGACATGCTTTCAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGTACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATATTAAAGAGCTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1669#0 ------------------------------------------------------------ consensus_1669#1 CAACACCCAACGGATGGAAATAATAAACAAGGAAAAATCTGATAACGAGGAAAAATTGTG 60 consensus_1669#0 ------------------------------------------------------------ consensus_1669#1 TCACAATCATCATCTTGTTATTCAATCAATGTAAGGACATGCGACGGACAATGGCAATGG 120 consensus_1669#0 -----------------------------GGCAGAATCCCCACGATTAGAAAGTAGGATG 31 consensus_1669#1 GAAGGAATCTACAAAAAAGGAAAAAAAAATTGAGACGTTTTTCGAAGAAAAGTAAGGATG 180 *** *** * ** ****** consensus_1669#0 AACCAGCTCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATC 91 consensus_1669#1 AACCAG-TCGTACTTGGAGTTGTTGGTTACCGTGTTTAAGGGTAGTACAGACTCCCGATC 239 ****** ***************************************************** consensus_1669#0 CAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAAC 151 consensus_1669#1 CAAACAACGGTGAGAGGAATGATAAGGGCCCATGTCAACGAATTCATTATGCTACACAAC 299 ************************************************************ consensus_1669#0 AGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTC 211 consensus_1669#1 AGTTCGGCAACCTACAGCGTGAAAAAGCAAAACATAGCATTCAGATCCCTCGTTTCGTTC 359 ************************************************************ consensus_1669#0 TGAGACACCAAGGGCAAGATTTATTGAGACTGATCTTCAGTTGATTTTACAACGACGGAT 271 consensus_1669#1 CGAGACACCAAGGGCAAGATTTAT-GAGAATGATCTTCAGTTGATTT-ACAACGACG-AT 416 *********************** **** ***************** ********* ** consensus_1669#0 GAGAAAAAGCCCCTTCGAACACTAAACATCCAAATACCAACCAAACTGTTAAGACATGCT 331 consensus_1669#1 GAGAAAG----CCCTCGAACACTAA-CATCCAAATACCAAC-AAACTGTTAAGACATGCT 470 ****** ** *********** *************** ****************** consensus_1669#0 TTCAAACAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGT 391 consensus_1669#1 TTCAA-CAAATATCATTCACGATTCGTTTGTACTAATTCGAGTTCTTCTACATTTATTGT 529 ***** ****************************************************** consensus_1669#0 ACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATANTTCAAA 451 consensus_1669#1 ACTTAACTTGATTTTGTAAGACATATTCTAATTTATGTTTACTACTATGGATATT--AAA 587 ***************************************************** * *** consensus_1669#0 GAGCTATGGAGGAAANTTNAANAAAACTCCACCGATTTGNATAACCATGAGTTCAAACAA 511 consensus_1669#1 GAGCTATG---------------------------------------------------- 595 ******** consensus_1669#0 ACAATAAACCATAAAACNATGATCAATTAACCATCAATAACGAAAGATGTAATATNATAA 571 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 CGACCAGGGAACACCCTTTTGCAGACCGGTCAATAACAGGAAATCANATAAGCTTACCAA 631 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 GGGTGGGTTGCATGAAGCCTGACANATTAACAACGATTNTTAACATTCGGCCGACTTTGG 691 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 AACCATACCACAATGTGTGTCACACACACTCGCTCCGCGGAAACGGCTGGCTCGATCAAG 751 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 GTCTCATCNACATTCCCTTCTACTAACTACNATAGCCCCNNAGT 795 consensus_1669#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||