These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT] [+] EMBL BM592780 [CCGCCCACGCGTCCGCCCACGCGTCCGAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT] consensusID : consensus_1680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [CCGAACAAAACAAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT] [+] EMBL BM595654 [CCGAACAAAACAAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1680#0 CCGCCCACGCGTCCGCCCACGCGTCCGAAATTGTACGGGCAGCACACAGCTCGTTTACGT 60 consensus_1680#1 ---------------CCGAACAAAACAAAATTGTACGGGCAGCACACAGCTCGTTTACGT 45 ** * * ********************************* consensus_1680#0 TCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAAT 120 consensus_1680#1 TCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAAT 105 ************************************************************ consensus_1680#0 AAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGT 180 consensus_1680#1 AAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGT 165 ************************************************************ consensus_1680#0 AACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCT 240 consensus_1680#1 AACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCT 225 ************************************************************ consensus_1680#0 TCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCT 300 consensus_1680#1 TCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCT 285 ************************************************************ consensus_1680#0 AGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAG 360 consensus_1680#1 AGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAG 345 ************************************************************ consensus_1680#0 CAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAA 420 consensus_1680#1 CAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAA 405 ************************************************************ consensus_1680#0 TGAATAAAAATTAAATTTGTTT 442 consensus_1680#1 TGAATAAAAATTAAATTTGTTT 427 ********************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||