These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1095 fasta sequence [CAGAATCGCCCCNGGNTTAAAGTGTATCATTCGGGTATGAAATGAATCAACGCAAACAAAAACAAACGAAAAAACGGGATACAAAAATGGGAAAATCTTAGCTGCTGCTTATTTTTGCTACAACGTATTACATTCATCAAAACTTCCTGCAAAAAAAAAGTGTAAAAATTGCTAAAACTCTAAAACATATAAAAGAAGAAACCGATCCTCTCGAACGCTACAGCGCTTTCTACGACGAACTCTATATGAAAACGATCTTTCGAAAACAAAAAGCAAACGGTATAACATAATATAACGATAGAATTGTTGCGTTGCGAACCGTTTGAAATGCACCTGTGTTTGTGCTCGCGCAACAGGCTTTTGCTCGCGCAGCCAAATTCGTCTTTCTCGCACACTGTGTTTCAAAACATTAGCTCTCTTTTTCTCACGCTTTCTTCTAAACCTTTCACCCCTCTACTTGCTCTTTGTAACGTTTCTCTCGTGTTANAAGAATACATTTTCTATAATATAAGTCAACCAACAAAAAACGGTTCAACCATTTGTACAGTCACAGGCATGACGGGTGAGGGACGACGCGCGTNACAACTATGTTCGACTTNACGTATAGCAGCCATGTGTTTCAGAAGGAAACACAGTTGCCTAATGGGATAATGGGTTACCAGGCNGAGGATCTGAGCGTATTAGTCACTTACCATGTAAAGAACAACCCCGTGGGCGCCANGGAATGGGTACGAAAGGTCCCGACAAAAACTGGGCCAGCATAAACGGCTGGACATTTCACATTCAACTTTCGACTATTCTAACCAACTAAGCGGGCAGCAGGTAACAGCGTATCTCTGCACCATGGGTAGGAGCTACCAGNATTNGGAACAATTNTCCACAATCTCCGGCTCCGNCTCGCACCCAACAGTCCACGAACAACCCCATGCTAAATTAAANTAAACCTCCTCCTCCCTCCGAAATCCTAGGTACACACCCTGGTTCGTGCACCCACAGANAACCCGTGAATTCACAACTCCAAGGCANATTCAAACAAGCTGGCCAATACGAGAAACCCCGCNGTTTGGAACCCNGACTNTTCCTCGTCCGGCCACA] [+] EMBL AL693587 [CAGAATCGCCCCNGGNTTAAAGTGTATCATTCGGGTATGAAATGAATCAACGCAAACAAAAACAAACGAAAAAACGGGATACAAAAATGGGAAAATCTTAGCTGCTGCTTATTTTTGCTACAACGTATTACATTCATCAAAACTTCCTGCAAAAAAAAAGTGTAAAAATTGCTAAAACTCTAAAACATATAAAAGAAGAAACCGATCCTCTCGAACGCTACAGCGCTTTCTACGACGAACTCTATATGAAAACGATCTTTCGAAAACAAAAAGCAAACGGTATAACATAATATAACGATAGAATTGTTGCGTTGCGAACCGTTTGAAATGCACCTGTGTTTGTGCTCGCGCAACAGGCTTTTGCTCGCGCAGCCAAATTCGTCTTTCTCGCACACTGTGTTTCAAAACATTAGCTCTCTTTTTCTCACGCTTTCTTCTAAACCTTTCACCCCTCTACTTGCTCTTTGTAACGTTTCTCTCGTGTTANAAGAATACATTTTCTATAATATAAGTCAACCAACAAAAAACGGTTCAACCATTTGTACAGTCACAGGCATGACGGGTGAGGGACGACGCGCGTNACAACTATGTTCGACTTNACGTATAGCAGCCATGTGTTTCAGAAGGAAACACAGTTGCCTAATGGGATAATGGGTTACCAGGCNGAGGATCTGAGCGTATTAGTCACTTACCATGTAAAGAACAACCCCGTGGGCGCCANGGAATGGGTACGAAAGGTCCCGACAAAAACTGGGCCAGCATAAACGGCTGGACATTTCACATTCAACTTTCGACTATTCTAACCAACTAAGCGGGCAGCAGGTAACAGCGTATCTCTGCACCATGGGTAGGAGCTACCAGNATTNGGAACAATTNTCCACAATCTCCGGCTCCGNCTCGCACCCAACAGTCCACGAACAACCCCATGCTAAATTAAANTAAACCTCCTCCTCCCTCCGAAATCCTAGGTACACACCCTGGTTCGTGCACCCACAGANAACCCGTGAATTCACAACTCCAAGGCANATTCAAACAAGCTGGCCAATACGAGAAACCCCGCNGTTTGGAACCCNGACTNTTCCTCGTCCGGCCACA] consensusID : consensus_1699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 852 fasta sequence [AGGCAGATCGGCCACGAGGGAGAAAACAACTACTACCACTACCCACTAATAGATCGGCTAAAGGACGCTAAACGGCGAGTGGAAAAGAAAAGCAAAAGCGGCGAAGAAAGTGAAAGGAACCAAAAAGCACACCAACAAGTTAGATAAGCCAAAGTGTATCATTCGGGGTTAATGAAATGTAATCCAACGCCAAACAAAAACCAAACGGAAAAAACGGGGATACAGAAATGGGGAAAATCTTAGCTGCTGCTTATTTTTGCGTACAACGTATTTCATTAATCNAAACTTCACGCAAAAAAAGTGTAAAAATTGCTATAACTCTNAAACATATTAAAAGAAGAAACCAATCCTCTCGAACGCTACAGCGCTTTCTACGACGAACTCTATATGAAAACGATCTTTCGAAAACAGAAAAGCAAACGGTATAACAGGAATATAACGATTGACATGTTGCGTTGCGAACCGTTTGAATGCGACCTGTGTTTGCGCCCGCGGCAACAGGCTTTTGCGTCGCGCAGCAAATTCGTCTTTCTCGGCACACTGTGTTTCAANAACATTAGCTCTCTCTTGTCTCACGCTTTCTTCTAAACCTTTCACCCCTCTAACTGCTCTTTGTAACNGTTTCNTCTCGTGTTAAACAGAATACATTTGTGCGTAATANNATANTAGGTCACAACGAAACAGACAACAGGGTTACACCANTGTGGTACCAGGAGTGACCACACGGGGAATTGAAAGGCGGTGTCATGGGGGAACGTGAANCGGCCGNCCGATTACCCAAGCTACATTGTTTTCGANCTTTTGAGTAGTTAAGNCAANACATGTGNGTTTCTACGGAANGGGCAGACAACA] [+] EMBL BX467387 [AGGCAGATCGGCCACGAGGGAGAAAACAACTACTACCACTACCCACTAATAGATCGGCTAAAGGACGCTAAACGGCGAGTGGAAAAGAAAAGCAAAAGCGGCGAAGAAAGTGAAAGGAACCAAAAAGCACACCAACAAGTTAGATAAGCCAAAGTGTATCATTCGGGGTTAATGAAATGTAATCCAACGCCAAACAAAAACCAAACGGAAAAAACGGGGATACAGAAATGGGGAAAATCTTAGCTGCTGCTTATTTTTGCGTACAACGTATTTCATTAATCNAAACTTCACGCAAAAAAAGTGTAAAAATTGCTATAACTCTNAAACATATTAAAAGAAGAAACCAATCCTCTCGAACGCTACAGCGCTTTCTACGACGAACTCTATATGAAAACGATCTTTCGAAAACAGAAAAGCAAACGGTATAACAGGAATATAACGATTGACATGTTGCGTTGCGAACCGTTTGAATGCGACCTGTGTTTGCGCCCGCGGCAACAGGCTTTTGCGTCGCGCAGCAAATTCGTCTTTCTCGGCACACTGTGTTTCAANAACATTAGCTCTCTCTTGTCTCACGCTTTCTTCTAAACCTTTCACCCCTCTAACTGCTCTTTGTAACNGTTTCNTCTCGTGTTAAACAGAATACATTTGTGCGTAATANNATANTAGGTCACAACGAAACAGACAACAGGGTTACACCANTGTGGTACCAGGAGTGACCACACGGGGAATTGAAAGGCGGTGTCATGGGGGAACGTGAANCGGCCGNCCGATTACCCAAGCTACATTGTTTTCGANCTTTTGAGTAGTTAAGNCAANACATGTGNGTTTCTACGGAANGGGCAGACAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1699#0 ------------------------------------------------------------ consensus_1699#1 AGGCAGATCGGCCACGAGGGAGAAAACAACTACTACCACTACCCACTAATAGATCGGCTA 60 consensus_1699#0 ------------------------------------------------------------ consensus_1699#1 AAGGACGCTAAACGGCGAGTGGAAAAGAAAAGCAAAAGCGGCGAAGAAAGTGAAAGGAAC 120 consensus_1699#0 ------------CAGAATCGCCCCNGGNTTAAAGTGTATCATTCGGGT---ATGAAATGA 45 consensus_1699#1 CAAAAAGCACACCAACAAGTTAGATAAGCCAAAGTGTATCATTCGGGGTTAATGAAATGT 180 ** * ***************** ******** consensus_1699#0 A--TCAACGC-AAACAAAAAC-AAACGAAAAAAC--GGGATACAAAAATGGG-AAAATCT 98 consensus_1699#1 AATCCAACGCCAAACAAAAACCAAACGGAAAAAACGGGGATACAGAAATGGGGAAAATCT 240 * ****** ********** ***** ***** ******** ******* ******* consensus_1699#0 TAGCTGCTGCTTATTTTTGC-TACAACGTATTACATTCATCAAAACTTCCTGCAAAAAAA 157 consensus_1699#1 TAGCTGCTGCTTATTTTTGCGTACAACGTATTTCATTAATCNAAACTTCACGCAAAAAAA 300 ******************** *********** **** *** ******* ********* consensus_1699#0 AAGTGTAAAAATTGCTAAAACTCTAAAACATAT-AAAAGAAGAAACCGATCCTCTCGAAC 216 consensus_1699#1 --GTGTAAAAATTGCTATAACTCTNAAACATATTAAAAGAAGAAACCAATCCTCTCGAAC 358 *************** ****** ******** ************* ************ consensus_1699#0 GCTACAGCGCTTTCTACGACGAACTCTATATGAAAACGATCTTTCGAAAACA-AAAAGCA 275 consensus_1699#1 GCTACAGCGCTTTCTACGACGAACTCTATATGAAAACGATCTTTCGAAAACAGAAAAGCA 418 **************************************************** ******* consensus_1699#0 AACGGTATAACAT-AATATAACGATAGAATTGTTGCGTTGCGAACCGTTTGAAATGCACC 334 consensus_1699#1 AACGGTATAACAGGAATATAACGATTGACATGTTGCGTTGCGAACCGTTTGAATGCGACC 478 ************ *********** ** *********************** *** consensus_1699#0 TGTGTTTGTGCTCGCG-CAACAGGCTTTTGC-TCGCGCAGCCAAATTCGTCTTTCTCG-C 391 consensus_1699#1 TGTGTTTGCGCCCGCGGCAACAGGCTTTTGCGTCGCGCAGC-AAATTCGTCTTTCTCGGC 537 ******** ** **** ************** ********* **************** * consensus_1699#0 ACACTGTGTTTCAAAA-CATTAGCTCTCTTTT-TCTCACGCTTTCTTCTAAACCTTTCAC 449 consensus_1699#1 ACACTGTGTTTCAANAACATTAGCTCTCTCTTGTCTCACGCTTTCTTCTAAACCTTTCAC 597 ************** * ************ ** *************************** consensus_1699#0 CCCTCTACTTGCTCTTTGTAACG--TTTCTCTCGTGTTANA-AGAATACATTT-TCTATA 505 consensus_1699#1 CCCTCTAACTGCTCTTTGTAACNGTTTCNTCTCGTGTTAAACAGAATACATTTGTGCGTA 657 ******* ************* ** ********** * *********** * ** consensus_1699#0 ATATAA--GTCAACCAACAAAAAACGGTTCAACCATTTGTACAGTCACAGGCATGACGGG 563 consensus_1699#1 ATANNATANTAGGTCACAACGAAACAGACAACAGGGTTACACCANTGT-GGTACCAGGAG 716 *** * * ** * **** * * ** ** ** * * * * consensus_1699#0 TGAGGG-ACGACGCGCGTNACAACTATGTT-CGACTTNACGTATAGCAGCCATGTGTTTC 621 consensus_1699#1 TGACCACACGGGGAATTGAAAGGCGGTGTCATGGGGGAACGTGAANCGGCCGNCCGATTA 776 *** *** * * * *** * **** * * *** * ** consensus_1699#0 AGAAGGAAACACAGTTGCCTAATGGGATAATGGGTTACCAGGCNGAGGATCTGAGCGTAT 681 consensus_1699#1 CCCAAGCTACATTGTTTTCGANC----TTTTGAGTAGTTAAGNC-AANACATGTGNGTTT 831 * * *** *** * * * ** ** * * * * ** * ** * consensus_1699#0 TAGTCACTTACCATGTAAAGAACAACCCCGTGGGCGCCANGGAATGGGTACGAAAGGTCC 741 consensus_1699#1 ---CTACGGAANGGGCAGACAACA------------------------------------ 852 ** * * * * **** consensus_1699#0 CGACAAAAACTGGGCCAGCATAAACGGCTGGACATTTCACATTCAACTTTCGACTATTCT 801 consensus_1699#1 ------------------------------------------------------------ consensus_1699#0 AACCAACTAAGCGGGCAGCAGGTAACAGCGTATCTCTGCACCATGGGTAGGAGCTACCAG 861 consensus_1699#1 ------------------------------------------------------------ consensus_1699#0 NATTNGGAACAATTNTCCACAATCTCCGGCTCCGNCTCGCACCCAACAGTCCACGAACAA 921 consensus_1699#1 ------------------------------------------------------------ consensus_1699#0 CCCCATGCTAAATTAAANTAAACCTCCTCCTCCCTCCGAAATCCTAGGTACACACCCTGG 981 consensus_1699#1 ------------------------------------------------------------ consensus_1699#0 TTCGTGCACCCACAGANAACCCGTGAATTCACAACTCCAAGGCANATTCAAACAAGCTGG 1041 consensus_1699#1 ------------------------------------------------------------ consensus_1699#0 CCAATACGAGAAACCCCGCNGTTTGGAACCCNGACTNTTCCTCGTCCGGCCACA 1095 consensus_1699#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||