These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [CTGCCTACTACAAACGCGACGTCCAACAATCAAGCCTCAGGAAAAGCATCAACTTCATCTTCGCCATTATCATCATCATCGTCATCTGCAACGAACGCTTTGCACCGTGGGCTGCCGGCTAATCCAAAGGCTTCCGTAACTACAGCTATTTTGCCATCTGTCGTATCGCATCCATCAATAGCATCCTCTAGCAAGGCAGAAGCGAGCAACACACAGAACACTCTCAACACACGCACTTTTCTAAATAATCAAAAAGATGAATCGGCTCTAACACTGCCATTACTTGAGAAGACTTCAACACCCGCGTCACAGTCATCACCGTCAACCAAGAGTTCCACTGAAACGAAACCAAACCACACCGCCGTCGAAGGTTCTAAAGTTGGTTCGCCTCCAGTGCCTCCACGTCGTAAGCGTGAATCAAGAACTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGNGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAANGGATCGTTTTTTTTTTTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATC] [+] EMBL BX624526 [CTGCCTACTACAAACGCGACGTCCAACAATCAAGCCTCAGGAAAAGCATCAACTTCATCTTCGCCATTATCATCATCATCGTCATCTGCAACGAACGCTTTGCACCGTGGGCTGCCGGCTAATCCAAAGGCTTCCGTAACTACAGCTATTTTGCCATCTGTCGTATCGCATCCATCAATAGCATCCTCTAGCAAGGCAGAAGCGAGCAACACACAGAACACTCTCAACACACGCACTTTTCTAAATAATCAAAAAGATGAATCGGCTCTAACACTGCCATTACTTGAGAAGACTTCAACACCCGCGTCACAGTCATCACCGTCAACCAAGAGTTCCACTGAAACGAAACCAAACCACACCGCCGTCGAAGGTTCTAAAGTTGGTTCGCCTCCAGTGCCTCCACGTCGTAAGCGTGAATCAAGAACTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGNGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAANGGATCGTTTTTTTTTTTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATC] consensusID : consensus_1710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [AGAATCGCCCGAGGGTTNTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGTGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAAGGGATCGTTTTTTTTTNTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATCCTGACCAAACCTGAGCCTTACCGAGACTTTGACCCATAGTGGGATAGTCCACGTCCACGGCATCTCCTTATTGTTATTGGTGGGTCGGTCCTATCCGTATATGGAACTAGGATGGACGTTATGTTGAGTCATACGTTTAACGACTACACTTCTCAAGGACTGTGCCGAAATTTGGTCAATTCAGTCATTTCACAAAGTCACTCANCTCGAAAAACAAACTAGACGGACCAAAAAGCAATACAGC] [+] EMBL AL693639 [AGAATCGCCCGAGGGTTNTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGTGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAAGGGATCGTTTTTTTTTNTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATCCTGACCAAACCTGAGCCTTACCGAGACTTTGACCCATAGTGGGATAGTCCACGTCCACGGCATCTCCTTATTGTTATTGGTGGGTCGGTCCTATCCGTATATGGAACTAGGATGGACGTTATGTTGAGTCATACGTTTAACGACTACACTTCTCAAGGACTGTGCCGAAATTTGGTCAATTCAGTCATTTCACAAAGTCACTCANCTCGAAAAACAAACTAGACGGACCAAAAAGCAATACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1710#0 CTGCCTACTACAAACGCGACGTCCAACAATCAAGCCTCAGGAAAAGCATCAACTTCATCT 60 consensus_1710#1 ------------------------------------------------------------ consensus_1710#0 TCGCCATTATCATCATCATCGTCATCTGCAACGAACGCTTTGCACCGTGGGCTGCCGGCT 120 consensus_1710#1 ------------------------------------------------------------ consensus_1710#0 AATCCAAAGGCTTCCGTAACTACAGCTATTTTGCCATCTGTCGTATCGCATCCATCAATA 180 consensus_1710#1 ------------------------------------------------------------ consensus_1710#0 GCATCCTCTAGCAAGGCAGAAGCGAGCAACACACAGAACACTCTCAACACACGCACTTTT 240 consensus_1710#1 ------------------------------------------------------------ consensus_1710#0 CTAAATAATCAAAAAGATGAATCGGCTCTAACACTGCCATTACTTGAGAAGACTTCAACA 300 consensus_1710#1 ------------------------------------------------------------ consensus_1710#0 CCCGCGTCACAGTCATCACCGTCAACCAAGAGTTCCACTGAAACGAAACCAAACCACACC 360 consensus_1710#1 ------------------------------------------------------------ consensus_1710#0 GCCGTCGAAGGTTCTAAAGTTGGTTCGCCTCCAGTGCCTCCACGTCGTAAGCGTGAATCA 420 consensus_1710#1 -------------------------------------------------AGAATCGCCCG 11 ** * * consensus_1710#0 AGAA--CTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTT 478 consensus_1710#1 AGGGTTNTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTT 71 ** ***************************************************** consensus_1710#0 CTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAA 538 consensus_1710#1 CTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAA 131 ************************************************************ consensus_1710#0 TTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACAC 598 consensus_1710#1 TTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACAC 191 ************************************************************ consensus_1710#0 AATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTC 658 consensus_1710#1 AATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTC 251 ************************************************************ consensus_1710#0 AACTTTCCTTCTAACCCGCTTTAATAGCTTCGGNGATTGCATCTTTTATCTTTAAAAAGC 718 consensus_1710#1 AACTTTCCTTCTAACCCGCTTTAATAGCTTCGGTGATTGCATCTTTTATCTTTAAAAAGC 311 ********************************* ************************** consensus_1710#0 ATTCAAATTCAATTTGTTTGAAANGGATCGTTTTTTTTTTTCATTTCCATCGCCACTACA 778 consensus_1710#1 ATTCAAATTCAATTTGTTTGAAAGGGATCGTTTTTTTTTNTCATTTCCATCGCCACTACA 371 *********************** *************** ******************** consensus_1710#0 ATAATTGGCAATCTACTAATC--------------------------------------- 799 consensus_1710#1 ATAATTGGCAATCTACTAATCCTGACCAAACCTGAGCCTTACCGAGACTTTGACCCATAG 431 ********************* consensus_1710#0 ------------------------------------------------------------ consensus_1710#1 TGGGATAGTCCACGTCCACGGCATCTCCTTATTGTTATTGGTGGGTCGGTCCTATCCGTA 491 consensus_1710#0 ------------------------------------------------------------ consensus_1710#1 TATGGAACTAGGATGGACGTTATGTTGAGTCATACGTTTAACGACTACACTTCTCAAGGA 551 consensus_1710#0 ------------------------------------------------------------ consensus_1710#1 CTGTGCCGAAATTTGGTCAATTCAGTCATTTCACAAAGTCACTCANCTCGAAAAACAAAC 611 consensus_1710#0 ------------------------- consensus_1710#1 TAGACGGACCAAAAAGCAATACAGC 636 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||