These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [CCGAGGTTTCACCATCAGTGCACCAGAAGAAATAAAGTTTCCGAATTTTCTAATCTAATCACCATTCGTATCCCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTATTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCAACACTGGCACCGTAAAGCCGGTGCAGCAANACGTGAGCACGGTGCAAGCAAACAGTGTATACCTTCACCAACTCACCCGCTCCCACCGTCTTCGGCGCAGATCTTACACGCACACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGCGTCTCCCCTGGTCTCCGCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCNCAAACGAGAGTGAGTGAGACAGAGAACAGGCANGCAGTGAAACCCCCCGTAAGAGAAAANNGCAGAAGCATNACGAGCCTTTAAAGCAAAAAGAAGAAAGGGAAATATC] [+] EMBL AL693657 [CCGAGGTTTCACCATCAGTGCACCAGAAGAAATAAAGTTTCCGAATTTTCTAATCTAATCACCATTCGTATCCCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTATTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCAACACTGGCACCGTAAAGCCGGTGCAGCAANACGTGAGCACGGTGCAAGCAAACAGTGTATACCTTCACCAACTCACCCGCTCCCACCGTCTTCGGCGCAGATCTTACACGCACACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGCGTCTCCCCTGGTCTCCGCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCNCAAACGAGAGTGAGTGAGACAGAGAACAGGCANGCAGTGAAACCCCCCGTAAGAGAAAANNGCAGAAGCATNACGAGCCTTTAAAGCAAAAAGAAGAAAGGGAAATATC] consensusID : consensus_1715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTTTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCCAACACTGGCCACCGCTAAAGCCGGGCAGCAAACGTGAGCACGGTGAAGCAAAAGTGTTTTTCCTTCACCAACTCACCCCGCCTCCCACCGTCTTCGGCGCAGATCTTACACGCACCACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGTGTCTCCCCTGTCTCCGCCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCCAACGGGAGTGAGTGAGACAGAGACAGGCAGCAGTGAAACCCCCCGTAAGAGAAAAAAAGAAGC] [+] EMBL BM600742 [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCTCCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCGTGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCCAAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACCCACTCTTATGTGTTTTTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGCCGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAAGCCGCCAACACTGGCCACCGCTAAAGCCGGGCAGCAAACGTGAGCACGGTGAAGCAAAAGTGTTTTTCCTTCACCAACTCACCCCGCCTCCCACCGTCTTCGGCGCAGATCTTACACGCACCACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGTGTCTCCCCTGTCTCCGCCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCCAACGGGAGTGAGTGAGACAGAGACAGGCAGCAGTGAAACCCCCCGTAAGAGAAAAAAAGAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1715#0 CCGAGGTTTCACCATCAGTGCACCAGAAGAAATAAAGTTTCCGAATTTTCTAATCTAATC 60 consensus_1715#1 ----------------------------------------------CCGCCCACGCGTCC 14 * * * consensus_1715#0 ACCATTCGTATCC-CCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCT 119 consensus_1715#1 GCC-CACGCGTCCGCCGTGTTCCGTGTGTGAAGCGACGGCCGTTGCCTATTTGTGTGTCT 73 ** ** *** ********************************************** consensus_1715#0 CCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCG 179 consensus_1715#1 CCGTACCCGTACCCGTGACACAATCAAACACCAACAGTGCTCTAGTATGCTCGTGCACCG 133 ************************************************************ consensus_1715#0 TGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCC 239 consensus_1715#1 TGCGAGGAAAAAACACTTTGTCAAGGGAACCTAATATACAAGGCCTGCGTTTTTTCGTCC 193 ************************************************************ consensus_1715#0 AAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACC 299 consensus_1715#1 AAGAAGGAGAGAGGTTCTGGTGGTCTTTTGTGTCCTCTCCCCCCACCTCTTTGTGTCACC 253 ************************************************************ consensus_1715#0 CACTCTTATGTGTTTATTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGC 359 consensus_1715#1 CACTCTTATGTGTTT-TTGTGTTACGCGAAAATCGTGTGGTGAGCGCGTGCTGGTACGGC 312 *************** ******************************************** consensus_1715#0 CGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAA 419 consensus_1715#1 CGCTTTGTAAGTGCATTTAATGTGTGCGGGCTGAATCATCGTTTCGATACCCATTCCAAA 372 ************************************************************ consensus_1715#0 GCCGC-AACACTGGC-ACCG-TAAAGCCGGTGCAGCAANACGTGAGCACGGTGCAAGCAA 476 consensus_1715#1 GCCGCCAACACTGGCCACCGCTAAAGCCGG-GCAGCAAA-CGTGAGCACGGTG-AAGCAA 429 ***** ********* **** ********* ******* ************* ****** consensus_1715#0 ACAGTGTATACCTTCACCAACTCACCCG--CTCCCACCGTCTTCGGCGCAGATCTTACAC 534 consensus_1715#1 AAGTGTTTTTCCTTCACCAACTCACCCCGCCTCCCACCGTCTTCGGCGCAGATCTTACAC 489 * * * ***************** ****************************** consensus_1715#0 GCAC-ACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGCGTCT 593 consensus_1715#1 GCACCACCAGCGGGGTTCTTATTCAATCGAAAGCTGTTACCCGCAAGAATCGTTGTGTCT 549 **** ************************************************** **** consensus_1715#0 CCCCTGGTCTCCGCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCNCAAACGAG 653 consensus_1715#1 CCCCTGTCTCCGCCACCTGTGATTTGCAAGCGAGCGTGCGTGCGTGCGAGCC--AACGGG 607 ****** * ************************************** **** * consensus_1715#0 AGTGAGTGAGACAGAGAACAGGCANGCAGTGAAACCCCCCGTAAGAGAAAANNGCAGAAG 713 consensus_1715#1 AGTGAGTGAGACAGAGA-CAGGCAG-CAGTGAAACCCCCCGTAAGAGAAAAAA--AGAAG 663 ***************** ****** ************************* ***** consensus_1715#0 CATNACGAGCCTTTAAAGCAAAAAGAAGAAAGGGAAATATC 754 consensus_1715#1 C---------------------------------------- 664 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||