These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [ATGGGTCTGCCACTAGTCAAACGAAAGAGCAGCAGCAGAAGGAGGTGGAGGAGGAAACCCCTTACGCCAGCTGCTCCTGTTCTACGTCTTCCGCCGAGCCGCAGCAGCGAACCGACGCGGAAGAACCGCCGCCATTACAGACCGATCCGCACGGTGGCGTCCGGAAGCTACACCTGCCCGCTGAGATCGCTCAAACCCACCGACCCTCAAGGCAACGAAAGTGAGGAAGAAAGTCATAAATACTTTCAGAATCTGAAACTGCTAAACCTGAGCAATGCTAAAATCGACTCCTGGGAAGACATCGACCGGTTGGCAGAGTTTCCGTCCCTGTGCAACGTTCGGCTACAGTACTGGCCGCTGTGGGCCCGGACCGACTCGACGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTGAACGGAGGCGACACGATCGGTGCGGTCGAGCGGGAGGACGCGGAACGGTCCTTCATCCGCCACTACCTGGACAAGCCGGACGCGGAGGCCAACGCCGGGTACTACGAGCTGATCGGGGTGCACGGGCAGCTCGATCCGCTCGTCAACATCGACCTCCGCCCGGAGCGGAAGGTAAAGGTGCGCTTCACCTTCGAGGATAAGGCGATCGAGCGTACGGTGGATGTGAACCGCACGGTAAGCGATTTGAAGTCCCGGCTGGAGCGGCTGTTCGATGTGCCGGCCGCCCGGATGCGGCTGTACTAAGTCGATCAGGACTTTCGCGATCTGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC] [+] EMBL CNS09A6F [ATGGGTCTGCCACTAGTCAAACGAAAGAGCAGCAGCAGAAGGAGGTGGAGGAGGAAACCCCTTACGCCAGCTGCTCCTGTTCTACGTCTTCCGCCGAGCCGCAGCAGCGAACCGACGCGGAAGAACCGCCGCCATTACAGACCGATCCGCACGGTGGCGTCCGGAAGCTACACCTGCCCGCTGAGATCGCTCAAACCCACCGACCCTCAAGGCAACGAAAGTGAGGAAGAAAGTCATAAATACTTTCAGAATCTGAAACTGCTAAACCTGAGCAATGCTAAAATCGACTCCTGGGAAGACATCGACCGGTTGGCAGAGTTTCCGTCCCTGTGCAACGTTCGGCTACAGTACTGGCCGCTGTGGGCCCGGACCGACTCGACGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTGAACGGAGGCGACACGATCGGTGCGGTCGAGCGGGAGGACGCGGAACGGTCCTTCATCCGCCACTACCTGGACAAGCCGGACGCGGAGGCCAACGCCGGGTACTACGAGCTGATCGGGGTGCACGGGCAGCTCGATCCGCTCGTCAACATCGACCTCCGCCCGGAGCGGAAGGTAAAGGTGCGCTTCACCTTCGAGGATAAGGCGATCGAGCGTACGGTGGATGTGAACCGCACGGTAAGCGATTTGAAGTCCCGGCTGGAGCGGCTGTTCGATGTGCCGGCCGCCCGGATGCGGCTGTACTAAGTCGATCAGGACTTTCGCGATCTGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC] consensusID : consensus_1722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCAGGCTTATAAGTACTGGCCCCTGTGGCGCCCGGACTGACTCGTNGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTTGAACGGAGTGCGACACGATCGGTGCGGTCGAGCGGGAGTGACGCGGAACGGTCCTTCATCCTGCCACTACCTGGACAAGCCTGGACGCTGGAACGGNCCCTGCCGGTACTACAGAGCTGATCGGGGTGCACTGGGCAGCTCGATCCGCATCGTCAACATCGACCTCCGCACCGGAGCTGGAAGGTAAAGTGTTGCGCTTCANCATTACNGAGGATAAGGCTGATCGAGCGTACGGTGGATGTGAACCTGCACGGTAAGCGATTTGAAGTACCCTGGACTGGAGCNGGCTAGTATCGATGTGCCTGGCACGACCGGATGCGGCATGTATTACGTCGATCAGGACTTNTCGCAGATACTNGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTACAGCTACAAATANGCTACCGGAGGATAGAGATCATCATACGAGCGGANGGTGAANAAGTTGATAGNATTGTGCGTACACCGTAAAGAAAGAGAGAGAGAGCGTTACATCTTCCTGCCTTCCTTACCATCGGGTAATCTAACAAGCAATATACTNTATCTNNCCCCCCCTCNT] [+] EMBL AL693711 [CCAGGCTTATAAGTACTGGCCCCTGTGGCGCCCGGACTGACTCGTNGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTTGAACGGAGTGCGACACGATCGGTGCGGTCGAGCGGGAGTGACGCGGAACGGTCCTTCATCCTGCCACTACCTGGACAAGCCTGGACGCTGGAACGGNCCCTGCCGGTACTACAGAGCTGATCGGGGTGCACTGGGCAGCTCGATCCGCATCGTCAACATCGACCTCCGCACCGGAGCTGGAAGGTAAAGTGTTGCGCTTCANCATTACNGAGGATAAGGCTGATCGAGCGTACGGTGGATGTGAACCTGCACGGTAAGCGATTTGAAGTACCCTGGACTGGAGCNGGCTAGTATCGATGTGCCTGGCACGACCGGATGCGGCATGTATTACGTCGATCAGGACTTNTCGCAGATACTNGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTACAGCTACAAATANGCTACCGGAGGATAGAGATCATCATACGAGCGGANGGTGAANAAGTTGATAGNATTGTGCGTACACCGTAAAGAAAGAGAGAGAGAGCGTTACATCTTCCTGCCTTCCTTACCATCGGGTAATCTAACAAGCAATATACTNTATCTNNCCCCCCCTCNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1722#0 ATGGGTCTGCCACTAGTCAAACGAAAGAGCAGCAGCAGAAGGAGGTGGAGGAGGAAACCC 60 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 CTTACGCCAGCTGCTCCTGTTCTACGTCTTCCGCCGAGCCGCAGCAGCGAACCGACGCGG 120 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 AAGAACCGCCGCCATTACAGACCGATCCGCACGGTGGCGTCCGGAAGCTACACCTGCCCG 180 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 CTGAGATCGCTCAAACCCACCGACCCTCAAGGCAACGAAAGTGAGGAAGAAAGTCATAAA 240 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 TACTTTCAGAATCTGAAACTGCTAAACCTGAGCAATGCTAAAATCGACTCCTGGGAAGAC 300 consensus_1722#1 ------------------------------------------------------------ consensus_1722#0 ATCGACCGGTTGGCAGAGTTTCCGTCCCTGTGCAACGTTCGGCTACAGTACTGGCCGCTG 360 consensus_1722#1 --------------------------------CCAGGCTTA--TA-AGTACTGGCCCCTG 25 * * * * ** ********** *** consensus_1722#0 TGG-GCCCGGACCGACTCGACGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCT 419 consensus_1722#1 TGGCGCCCGGACTGACTCGTNGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCT 85 *** ******** ****** *************************************** consensus_1722#0 GCCCAACATCAGTATTCT-GAACGGAG-GCGACACGATCGGTGCGGTCGAGCGGGAG-GA 476 consensus_1722#1 GCCCAACATCAGTATTCTTGAACGGAGTGCGACACGATCGGTGCGGTCGAGCGGGAGTGA 145 ****************** ******** ***************************** ** consensus_1722#0 CGCGGAACGGTCCTTCATCC-GCCACTACCTGGACAAGCC-GGACGCGGAGGCCAACGCC 534 consensus_1722#1 CGCGGAACGGTCCTTCATCCTGCCACTACCTGGACAAGCCTGGACGCTGGAACGGNCCCT 205 ******************** ******************* ****** * * * * consensus_1722#0 G--GGTACTAC-GAGCTGATCGGGGTGCAC-GGGCAGCTCGATCCGC-TCGTCAACATCG 589 consensus_1722#1 GCCGGTACTACAGAGCTGATCGGGGTGCACTGGGCAGCTCGATCCGCATCGTCAACATCG 265 * ******** ****************** **************** ************ consensus_1722#0 ACCTCCGC-CCGGAGC-GGAAGGTAAAGG--TGCGCTTCACCTT---CGAGGATAAGGC- 641 consensus_1722#1 ACCTCCGCACCGGAGCTGGAAGGTAAAGTGTTGCGCTTCANCATTACNGAGGATAAGGCT 325 ******** ******* *********** ********* * * *********** consensus_1722#0 GATCGAGCGTACGGTGGATGTGAACC-GCACGGTAAGCGATTTGAAGTCCC---GGCTGG 697 consensus_1722#1 GATCGAGCGTACGGTGGATGTGAACCTGCACGGTAAGCGATTTGAAGTACCCTGGACTGG 385 ************************** ********************* ** * **** consensus_1722#0 AGCGG-CTGTT--CGATGTGCCGGCCGC--CCGGATGCGGC-TGTACTAAGTCGATCAGG 751 consensus_1722#1 AGCNGGCTAGTATCGATGTGCCTGGCACGACCGGATGCGGCATGTATTACGTCGATCAGG 445 *** * ** * ********* * * * *********** **** ** ********** consensus_1722#0 ACTTT-CGCG---ATCTGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC 807 consensus_1722#1 ACTTNTCGCAGATACTNGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC 505 **** *** * ******************************************* consensus_1722#0 ------------------------------------------------------------ consensus_1722#1 AGCTACAAATANGCTACCGGAGGATAGAGATCATCATACGAGCGGANGGTGAANAAGTTG 565 consensus_1722#0 ------------------------------------------------------------ consensus_1722#1 ATAGNATTGTGCGTACACCGTAAAGAAAGAGAGAGAGAGCGTTACATCTTCCTGCCTTCC 625 consensus_1722#0 --------------------------------------------------- consensus_1722#1 TTACCATCGGGTAATCTAACAAGCAATATACTNTATCTNNCCCCCCCTCNT 676 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||