These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCCAATTTCTATCAAACTTCCGCCATCCTGGCAAGCTTTCTGGAAACGGCTACGTTGCGCTACCGTTTGAAAGGATCGGCCACAACCGGTTCGGGCGCGTACCTTTCCGGCTTGTGCGGCGATTTGAGTGCGTACGGTCGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCCCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGAAAACGTGCCGTCATCCAGTCGGTGTGTGCCCATGGGCTGCCCCAGAACCGGCTGAAACGGCCACCGACGGCCAAATCGGCCCAACGGCAGCAGGCAATGCCCGCGTACCGGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGCCCCATGCTCATCCGGCAACCGTTCCCGGTGGAGCTGTTTGACAAGCGCGTAGGGTTTGACGGTTTCCTTACCGACGATCCGCTGGCCCAAGCGGCCCTGCCGTACGTCCAGAGCAGTCCGGCGCTGGCTGCGATACAATCGTCATCCGATTTGGGCGACGGGTTGGAGGCGCTGCACCGGGAAGTTAGCCGTATCCGGCTGGCA] [+] EMBL BM650091 [CCGCCAATTTCTATCAAACTTCCGCCATCCTGGCAAGCTTTCTGGAAACGGCTACGTTGCGCTACCGTTTGAAAGGATCGGCCACAACCGGTTCGGGCGCGTACCTTTCCGGCTTGTGCGGCGATTTGAGTGCGTACGGTCGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCCCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGAAAACGTGCCGTCATCCAGTCGGTGTGTGCCCATGGGCTGCCCCAGAACCGGCTGAAACGGCCACCGACGGCCAAATCGGCCCAACGGCAGCAGGCAATGCCCGCGTACCGGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGCCCCATGCTCATCCGGCAACCGTTCCCGGTGGAGCTGTTTGACAAGCGCGTAGGGTTTGACGGTTTCCTTACCGACGATCCGCTGGCCCAAGCGGCCCTGCCGTACGTCCAGAGCAGTCCGGCGCTGGCTGCGATACAATCGTCATCCGATTTGGGCGACGGGTTGGAGGCGCTGCACCGGGAAGTTAGCCGTATCCGGCTGGCA] consensusID : consensus_1724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [AGAATCGCCACGAGGTGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCTCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGCAAACGTGCCGTCATCCAGTCGGTGTGTGCCCGTGGGCTGCCCCAGAACCGACTGAAACGGCCACCGACTGCCAAATCAGCCCAACGGCAGCAGGCAATGCCCGCGTACCAGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGGCCCCATGCTCATCCGGN] [+] EMBL BX466521 [AGAATCGCCACGAGGTGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCTCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGCAAACGTGCCGTCATCCAGTCGGTGTGTGCCCGTGGGCTGCCCCAGAACCGACTGAAACGGCCACCGACTGCCAAATCAGCCCAACGGCAGCAGGCAATGCCCGCGTACCAGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGGCCCCATGCTCATCCGGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1724#0 CCGCCAATTTCTATCAAACTTCCGCCATCCTGGCAAGCTTTCTGGAAACGGCTACGTTGC 60 consensus_1724#1 ------------------------------------------------------------ consensus_1724#0 GCTACCGTTTGAAAGGATCGGCCACAACCGGTTCGGGCGCGTACCTTTCCGGCTTGTGCG 120 consensus_1724#1 ------------------------------------------------------------ consensus_1724#0 GCGATTTGAGTGCGTACG-GTCGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCC 179 consensus_1724#1 ------AGAATCGCCACGAGGTGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCT 54 ** * *** * ************************************* consensus_1724#0 CTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACG 239 consensus_1724#1 CTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACG 114 ************************************************************ consensus_1724#0 GTTCAGCTGTCTCCCAACGCGGTCGTGCGAAAACGTGCCGTCATCCAGTCGGTGTGTGCC 299 consensus_1724#1 GTTCAGCTGTCTCCCAACGCGGTCGTGCGCAAACGTGCCGTCATCCAGTCGGTGTGTGCC 174 ***************************** ****************************** consensus_1724#0 CATGGGCTGCCCCAGAACCGGCTGAAACGGCCACCGACGGCCAAATCGGCCCAACGGCAG 359 consensus_1724#1 CGTGGGCTGCCCCAGAACCGACTGAAACGGCCACCGACTGCCAAATCAGCCCAACGGCAG 234 * ****************** ***************** ******** ************ consensus_1724#0 CAGGCAATGCCCGCGTACCGGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCC 419 consensus_1724#1 CAGGCAATGCCCGCGTACCAGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCC 294 ******************* **************************************** consensus_1724#0 TGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAG-CCCCATGCTCATCCG 478 consensus_1724#1 TGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGGCCCCATGCTCATCCG 354 ******************************************** *************** consensus_1724#0 GCAACCGTTCCCGGTGGAGCTGTTTGACAAGCGCGTAGGGTTTGACGGTTTCCTTACCGA 538 consensus_1724#1 GN---------------------------------------------------------- 356 * consensus_1724#0 CGATCCGCTGGCCCAAGCGGCCCTGCCGTACGTCCAGAGCAGTCCGGCGCTGGCTGCGAT 598 consensus_1724#1 ------------------------------------------------------------ consensus_1724#0 ACAATCGTCATCCGATTTGGGCGACGGGTTGGAGGCGCTGCACCGGGAAGTTAGCCGTAT 658 consensus_1724#1 ------------------------------------------------------------ consensus_1724#0 CCGGCTGGCA 668 consensus_1724#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||