These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [TTCGGAGCAGAATCGGCCACGAGGNNTACCAAGAAACAATAGTTGAGGCGNTACAAACCAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGGATTGACTGTTTCGGATTGAGGCTATGTAAGATGGGTGTAACGTGAAATGGGGAACACGAATTGGGCTTCTGGCTAGGGGAGCACTACTAACTAGTGTGTAGTTNAGTAAAGCTTCCTAAGATTTGGTGACTTTAGGAGCTACACGCTTTTTGGTGGACAGTATGACAGACTGGTTGTTCCACTAGAAAGGCAACAAGTGGGGGCAAAGCTTTCAGGCTGCGGGATGTGGTAGTGTGGCCGTAACATCGCAACAAGCAGGNANAAGGTCATGGGGCTACC] [+] EMBL BX469319 [TTCGGAGCAGAATCGGCCACGAGGNNTACCAAGAAACAATAGTTGAGGCGNTACAAACCAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGGATTGACTGTTTCGGATTGAGGCTATGTAAGATGGGTGTAACGTGAAATGGGGAACACGAATTGGGCTTCTGGCTAGGGGAGCACTACTAACTAGTGTGTAGTTNAGTAAAGCTTCCTAAGATTTGGTGACTTTAGGAGCTACACGCTTTTTGGTGGACAGTATGACAGACTGGTTGTTCCACTAGAAAGGCAACAAGTGGGGGCAAAGCTTTCAGGCTGCGGGATGTGGTAGTGTGGCCGTAACATCGCAACAAGCAGGNANAAGGTCATGGGGCTACC] consensusID : consensus_1730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [CAACTAGCCACGCANGAATCGGCACGAGGANGATACCCAAAAACAACTAGTTGAGGCGCANTACAAACAAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGACTTGATGTTTCGGACTTGACGGCTACTGTAGATGGGTGTAAGGTGACAATGGGGAAAGATTGGCTCTGGCTAGGGACGAATATNATANTGTTATGAGTACAATCCCTAACTTTGGTGCANTGTAGAATATATTTTGTTGACATTGA] [+] EMBL BX469366 [CAACTAGCCACGCANGAATCGGCACGAGGANGATACCCAAAAACAACTAGTTGAGGCGCANTACAAACAAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTTCGTCGACTTGATGTTTCGGACTTGACGGCTACTGTAGATGGGTGTAAGGTGACAATGGGGAAAGATTGGCTCTGGCTAGGGACGAATATNATANTGTTATGAGTACAATCCCTAACTTTGGTGCANTGTAGAATATATTTTGTTGACATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1730#0 ------TTCGGAGCAGAATCGGC-CACGAGGNNTACCAAGAAACAA-TAGTTGAGGCGN- 51 consensus_1730#1 CAACTAGCCACGCANGAATCGGCACGAGGANGATACCCAAAAACAACTAGTTGAGGCGCA 60 * ******** * * **** * ****** *********** consensus_1730#0 -TACAAACCAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTT 110 consensus_1730#1 NTACAAACAAAATCGGTTGGATGTATCATACCGTACAAATACCACCAGAAGAAGGAAGTT 120 ******* *************************************************** consensus_1730#0 CGTCGGATTGACTGTTTCGGA-TTGA-GGCTATGTAAGATGGGTGTAACGTGA-AATGGG 167 consensus_1730#1 CGTCGACTTGA-TGTTTCGGACTTGACGGCTACTGTAGATGGGTGTAAGGTGACAATGGG 179 ***** **** ********* **** ***** ************ **** ****** consensus_1730#0 GAACACGAATTGGGCTTCTGGCTAGGGGAGCACTACTAACTAGTGTGTAGTTNAGTAAAG 227 consensus_1730#1 GAA---AGATTGG--CTCTGGCTAGGGACG-AATATNA--TANTGT-TA--TGAGTACAA 228 *** ***** *********** * * ** * ** *** ** * **** * consensus_1730#0 CTTCCTAAGATTTGGTG-ACTTTAGGAGCTACACGCTTTTTGGTGGACAGTATGACAGAC 286 consensus_1730#1 --TCCCTAACTTTGGTGCANTGTAGAATATATTTTGTTGACATTGA-------------- 272 *** * ******* * * *** * ** ** ** consensus_1730#0 TGGTTGTTCCACTAGAAAGGCAACAAGTGGGGGCAAAGCTTTCAGGCTGCGGGATGTGGT 346 consensus_1730#1 ------------------------------------------------------------ consensus_1730#0 AGTGTGGCCGTAACATCGCAACAAGCAGGNANAAGGTCATGGGGCTACC 395 consensus_1730#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||