Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1745 cluster # 1745       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1745#0 length = 688 sequences # 1  
consensus_1745#1 length = 577 sequences # 1  

consensusID : consensus_1745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTTCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCGCCGGTGTTATAGCAGTTTCCGAAACCGATACGGTAGTGCTTTCCTTTCCTCCCCATAATCCATAGCATCGGTGGTTTGTGTGTATGTACATGAGTAAAACGCCCATCGTCCTGGCGTATCGCTTGGGGTGATTGTTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGATGCGGTTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGTTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCTGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTACTCGTTCGGCATTCAGTACGTGTATGTGGCGCTCGGCGTAACGCTGATGGGCTTCGTGATGGGCTTCATCTACCTGCCGGTGTTTCACAAGCTCAACATCACATCCACGTACGAGTATCTGGAGACACG]

[+] EMBL BM630451             [CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTTCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCGCCGGTGTTATAGCAGTTTCCGAAACCGATACGGTAGTGCTTTCCTTTCCTCCCCATAATCCATAGCATCGGTGGTTTGTGTGTATGTACATGAGTAAAACGCCCATCGTCCTGGCGTATCGCTTGGGGTGATTGTTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGATGCGGTTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGTTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCTGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTACTCGTTCGGCATTCAGTACGTGTATGTGGCGCTCGGCGTAACGCTGATGGGCTTCGTGATGGGCTTCATCTACCTGCCGGTGTTTCACAAGCTCAACATCACATCCACGTACGAGTATCTGGAGACACG]


>consensus_1745#0 CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGATCGAACATTCGCTGCGCCACGGCGGAT AGATAAAGGATTGTTCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCGCCGG TGTTATAGCAGTTTCCGAAACCGATACGGTAGTGCTTTCCTTTCCTCCCCATAATCCATA GCATCGGTGGTTTGTGTGTATGTACATGAGTAAAACGCCCATCGTCCTGGCGTATCGCTT GGGGTGATTGTTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGG CGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGATGCGGTTCGCCTGGC CGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCG GTTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGA TGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCTGGCATTACCCTGCTCG GGCTACCGACGGAGGTGTACTCGTTCGGCATTCAGTACGTGTATGTGGCGCTCGGCGTAA CGCTGATGGGCTTCGTGATGGGCTTCATCTACCTGCCGGTGTTTCACAAGCTCAACATCA CATCCACGTACGAGTATCTGGAGACACG



consensusID : consensus_1745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence
                              [CCGCGGGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTCCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCACCGGTGGTGTAGCAGCTTCCGAAACCGATACGGTAGTGCTTTCTTTCCCTCCCCTTAATCGATAGTATCGGTGGTTTGTGTGTTTTTGTGTCTGTGTACATGAGTAAAACGCCCATCGTCCTGGCGTGTCGTTTGGGGTGATTGCTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGAGGCGATTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGGTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCCGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTATTCGTTCGGCATTCAGTACGTGTATGTG]

[+] EMBL BM605583             [CCGCGGGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTCCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCACCGGTGGTGTAGCAGCTTCCGAAACCGATACGGTAGTGCTTTCTTTCCCTCCCCTTAATCGATAGTATCGGTGGTTTGTGTGTTTTTGTGTCTGTGTACATGAGTAAAACGCCCATCGTCCTGGCGTGTCGTTTGGGGTGATTGCTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGAGGCGATTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGGTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCCGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTATTCGTTCGGCATTCAGTACGTGTATGTG]


>consensus_1745#1 CCGCGGGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTCCCTTT ATCGCGAACACGTTTCTGACGCGCATCTGATGTCCACCGGTGGTGTAGCAGCTTCCGAAA CCGATACGGTAGTGCTTTCTTTCCCTCCCCTTAATCGATAGTATCGGTGGTTTGTGTGTT TTTGTGTCTGTGTACATGAGTAAAACGCCCATCGTCCTGGCGTGTCGTTTGGGGTGATTG CTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCAT GGCAACGGATTTGGAGGACATTGTGGAGCACATGAGGCGATTCGCCTGGCCGGACTACCT GGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGGTTTGTGCA ACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCC GATCGCCCTTTCCCTCATCGCTAGCTTCATTTCCGGCATTACCCTGCTCGGGCTACCGAC GGAGGTGTATTCGTTCGGCATTCAGTACGTGTATGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1745#0      CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGATCGAACATTCGCTGCGCCACGGCGGAT 60
consensus_1745#1      --------------------CCGCGGGCGAGGATCGAACATTCGCTGCGCCACGGCGGAT 40
                                           **   **********************************

consensus_1745#0      AGATAAAGGATTGTTCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCGCCGG 120
consensus_1745#1      AGATAAAGGATTGTCCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCACCGG 100
                      ************** **************************************** ****

consensus_1745#0      TGTTATAGCAGTTTCCGAAACCGATACGGTAGTGCTTTCCTTTCCTCCCCATAATCCATA 180
consensus_1745#1      TGGTGTAGCAGCTTCCGAAACCGATACGGTAGTGCTTTCTTTCCCTCCCCTTAATCGATA 160
                      ** * ****** *************************** ** ******* ***** ***

consensus_1745#0      GCATCGGTGGTTTGTGTGT----------ATGTACATGAGTAAAACGCCCATCGTCCTGG 230
consensus_1745#1      GTATCGGTGGTTTGTGTGTTTTTGTGTCTGTGTACATGAGTAAAACGCCCATCGTCCTGG 220
                      * *****************           ******************************

consensus_1745#0      CGTATCGCTTGGGGTGATTGTTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGG 290
consensus_1745#1      CGTGTCGTTTGGGGTGATTGCTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGG 280
                      *** *** ************ ***************************************

consensus_1745#0      CGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGATGCGG 350
consensus_1745#1      CGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGAGGCGA 340
                      ******************************************************* *** 

consensus_1745#0      TTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGC 410
consensus_1745#1      TTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGC 400
                      ************************************************************

consensus_1745#0      GTCTACTTCGGTTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGC 470
consensus_1745#1      GTCTACTTCGGGTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGC 460
                      *********** ************************************************

consensus_1745#0      CGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCTGGCATT 530
consensus_1745#1      CGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCCGGCATT 520
                      ***************************************************** ******

consensus_1745#0      ACCCTGCTCGGGCTACCGACGGAGGTGTACTCGTTCGGCATTCAGTACGTGTATGTGGCG 590
consensus_1745#1      ACCCTGCTCGGGCTACCGACGGAGGTGTATTCGTTCGGCATTCAGTACGTGTATGTG--- 577
                      ***************************** ***************************   

consensus_1745#0      CTCGGCGTAACGCTGATGGGCTTCGTGATGGGCTTCATCTACCTGCCGGTGTTTCACAAG 650
consensus_1745#1      ------------------------------------------------------------
                                                                                  

consensus_1745#0      CTCAACATCACATCCACGTACGAGTATCTGGAGACACG 688
consensus_1745#1      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)