These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTATTAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTGCAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTTCATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAACACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATCCAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGTAATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGGTCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACCAGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAAACTTTTTGATGTCC] [+] EMBL BM592477 [CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTATTAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTGCAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTTCATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAACACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATCCAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGTAATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGGTCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACCAGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAAACTTTTTGATGTCC] consensusID : consensus_1756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCAATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTCATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAGTATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTA] [+] EMBL BX467160 [GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCAATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTCATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAGTATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1756#0 CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATT 60 consensus_1756#1 ----------------------------------------------------GGCAAGAA 8 * * consensus_1756#0 TAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTAT 120 consensus_1756#1 TCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCA-ATCAT-T 66 * * ** * * ***** * * * ** *** ** * * consensus_1756#0 TAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTG 180 consensus_1756#1 TGGAGAAATGCTTGACG----ACCGTGCTATGCTTTATAATCCAGA----TGAACCTATT 118 * ** ** * * ** * * ** * * ** ** ** ** * * * consensus_1756#0 CAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTT 240 consensus_1756#1 TCATTTACTCGATC--CCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTT 176 * * * *** *** * * * * ** *** ** * * ** * * ** consensus_1756#0 CATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAAC 300 consensus_1756#1 C-CANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAA---AAGGTCAAAATAAC 232 * * * *** ** ** ** *** * *** *** consensus_1756#0 ACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATC 360 consensus_1756#1 AGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAA 292 * * * * ** ** *** * * * ** * ** ** * * * consensus_1756#0 CAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGT 420 consensus_1756#1 TATTTTAGTATCGCG-AATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATT 351 * ** * ** * **** **** *** ** ** * consensus_1756#0 AATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGG 480 consensus_1756#1 TA-GCTTCGAAAGTATAAGAAACAAA-ATTA----------------------------- 380 * * ** * * ** **** * * ** consensus_1756#0 TCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACC 540 consensus_1756#1 ------------------------------------------------------------ consensus_1756#0 AGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAA 600 consensus_1756#1 ------------------------------------------------------------ consensus_1756#0 ACTTTTTGATGTCC 614 consensus_1756#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||