Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1756 cluster # 1756       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1756#0 length = 614 sequences # 1  
consensus_1756#1 length = 380 sequences # 1  

consensusID : consensus_1756#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTATTAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTGCAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTTCATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAACACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATCCAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGTAATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGGTCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACCAGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAAACTTTTTGATGTCC]

[+] EMBL BM592477             [CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTATTAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTGCAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTTCATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAACACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATCCAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGTAATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGGTCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACCAGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAAACTTTTTGATGTCC]


>consensus_1756#0 CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATT TAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTAT TAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTG CAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTT CATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAAC ACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATC CAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGT AATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGG TCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACC AGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAA ACTTTTTGATGTCC



consensusID : consensus_1756#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence
                              [GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCAATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTCATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAGTATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTA]

[+] EMBL BX467160             [GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCAATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTCATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAGTATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTA]


>consensus_1756#1 GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCA ATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTC ATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCAN TTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAG CCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAG TATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGA AAGTATAAGAAACAAAATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1756#0      CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATT 60
consensus_1756#1      ----------------------------------------------------GGCAAGAA 8
                                                                          *   *   

consensus_1756#0      TAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTAT 120
consensus_1756#1      TCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCA-ATCAT-T 66
                      * *   **     *    * *****  *          *  * **    ***  ** * *

consensus_1756#0      TAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTG 180
consensus_1756#1      TGGAGAAATGCTTGACG----ACCGTGCTATGCTTTATAATCCAGA----TGAACCTATT 118
                      *  ** ** * * ** *    *   ** *   *  ** **   **     ** * *  * 

consensus_1756#0      CAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTT 240
consensus_1756#1      TCATTTACTCGATC--CCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTT 176
                        *  *  * ***   *** *   *  * *  ** ***  ** * *  ** *   *  **

consensus_1756#0      CATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAAC 300
consensus_1756#1      C-CANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAA---AAGGTCAAAATAAC 232
                      *  *         *  ***     **  **   **     ***    *     *** ***

consensus_1756#0      ACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATC 360
consensus_1756#1      AGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAA 292
                      *  *  *   *      **   ** *** * * * ** * **  **    * *    *  

consensus_1756#0      CAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGT 420
consensus_1756#1      TATTTTAGTATCGCG-AATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATT 351
                       *       **      *   ** * ****      ****       *** **   ** *

consensus_1756#0      AATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGG 480
consensus_1756#1      TA-GCTTCGAAAGTATAAGAAACAAA-ATTA----------------------------- 380
                       * * **  * *  ** ****  * *  **                              

consensus_1756#0      TCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACC 540
consensus_1756#1      ------------------------------------------------------------
                                                                                  

consensus_1756#0      AGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAA 600
consensus_1756#1      ------------------------------------------------------------
                                                                                  

consensus_1756#0      ACTTTTTGATGTCC 614
consensus_1756#1      --------------
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)