These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGCCCACGCGTCCGGAAAAGGAACGGAAAATGAAAAGGCCACTAATTGTGAACATCCGTACGTCGGATTGTGAGGAAACGAATGTTTAAAGGAAAGCACATACACATACATAAGTTGTATATAGATTTTATGTTACTAATCGTAACGTTACTGATTGGTGGCAGTATGAAGGAGCATTGAGTAAGATTAATTATTAAAAAAAAGGTTTCTGTTAACATTTTTCTTCGTTCTGAAGAAGCAACCACGTGTGTGAAAATGTAAGATAAGGCTATACATCACACGATTGTTTTTTTTTATATGTACATTTTTAATTTAATCTTTTCGAAGATTTGCTTAAAAAGGCTCATTTGTACAGGCCTCAAAAGGTGTATGCGATAAGGTAACGTTTCGTTCATACAAAAGGTAGCGCATATGTATTTAGCAAGCGTTTAATTTACGTTCTACTACGCAAGGTACACACTCCTGTGTGTATTTGTAGTTTCGAACGCCGCTTAAGGAATGTTGTAATCTTTTTTCGTTGTTTTCGCTTAAGGTTTATGGTCGGTTTGTTTGTTTAAAAAAATTGTTTGTGCTTTTAAATTTTTGGTTTGGTTGCTGACGTCCGGAAAATAATTTGTTAAAAGCAGTCGATTTTCGTTACGACCATTAAATGCTGTGTTATATAGTTTCATAAAGCGTAAGTGAAAACGGTCGCGGCACCCGTTGC] [+] EMBL BM588955 [CCGCCCACGCGTCCGGAAAAGGAACGGAAAATGAAAAGGCCACTAATTGTGAACATCCGTACGTCGGATTGTGAGGAAACGAATGTTTAAAGGAAAGCACATACACATACATAAGTTGTATATAGATTTTATGTTACTAATCGTAACGTTACTGATTGGTGGCAGTATGAAGGAGCATTGAGTAAGATTAATTATTAAAAAAAAGGTTTCTGTTAACATTTTTCTTCGTTCTGAAGAAGCAACCACGTGTGTGAAAATGTAAGATAAGGCTATACATCACACGATTGTTTTTTTTTATATGTACATTTTTAATTTAATCTTTTCGAAGATTTGCTTAAAAAGGCTCATTTGTACAGGCCTCAAAAGGTGTATGCGATAAGGTAACGTTTCGTTCATACAAAAGGTAGCGCATATGTATTTAGCAAGCGTTTAATTTACGTTCTACTACGCAAGGTACACACTCCTGTGTGTATTTGTAGTTTCGAACGCCGCTTAAGGAATGTTGTAATCTTTTTTCGTTGTTTTCGCTTAAGGTTTATGGTCGGTTTGTTTGTTTAAAAAAATTGTTTGTGCTTTTAAATTTTTGGTTTGGTTGCTGACGTCCGGAAAATAATTTGTTAAAAGCAGTCGATTTTCGTTACGACCATTAAATGCTGTGTTATATAGTTTCATAAAGCGTAAGTGAAAACGGTCGCGGCACCCGTTGC] consensusID : consensus_1759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CCGAGTTAATCGCAAATGGTATAAAACGAGTAGATAAAGGATAGAGAGCAAGTAAAAGAGGGACAATGCTACTATTGAAAAGGAAAATGGAAAGGCCACTAATTGTGAACATCCGGGCATCGGATTGTAAGGAAACGAATGTTTAAAGGAAAGCACATACACATACATAAGTTGTATATAGATTTTATGTTACTAATCGTAAAGTTACTGATTGGTGGCAGTATGAAGGAGCATTGAGTAAGATTAATTATAAAAAAAAGGTTTCTGTTAACATTTTTCTTCGTTCTGAAGAAGCAAACACGTGTGTGAAAATGTAAGATAAGGCTATACATCACAAGATTGTTTTTTTTATATGCACATTTTTAATTTAATCTTTTCGAAGATTTGCTTAAAAAGGCTCATTTGTACAGGCCGCAAAAGGTGTATGCGATAAGGTAACGTTTCGTTCGCATATGTATGTAGCAAGCGTTTAATTTACGTTCTACTACGCAAGGTACACTCTCTTGTGTGTATTAATGTATAGTTT] [+] EMBL BM653383 [CCGAGTTAATCGCAAATGGTATAAAACGAGTAGATAAAGGATAGAGAGCAAGTAAAAGAGGGACAATGCTACTATTGAAAAGGAAAATGGAAAGGCCACTAATTGTGAACATCCGGGCATCGGATTGTAAGGAAACGAATGTTTAAAGGAAAGCACATACACATACATAAGTTGTATATAGATTTTATGTTACTAATCGTAAAGTTACTGATTGGTGGCAGTATGAAGGAGCATTGAGTAAGATTAATTATAAAAAAAAGGTTTCTGTTAACATTTTTCTTCGTTCTGAAGAAGCAAACACGTGTGTGAAAATGTAAGATAAGGCTATACATCACAAGATTGTTTTTTTTATATGCACATTTTTAATTTAATCTTTTCGAAGATTTGCTTAAAAAGGCTCATTTGTACAGGCCGCAAAAGGTGTATGCGATAAGGTAACGTTTCGTTCGCATATGTATGTAGCAAGCGTTTAATTTACGTTCTACTACGCAAGGTACACTCTCTTGTGTGTATTAATGTATAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1759#0 --------------------------------------------------------CCGC 4 consensus_1759#1 CCGAGTTAATCGCAAATGGTATAAAACGAGTAGATAAAGGATAGAGAGCAAGTAAAAGAG 60 consensus_1759#0 CCACGCGTCCGGAAAAGGAACGGAAAATGAAAAGGCCACTAATTGTGAACATCCGTACGT 64 consensus_1759#1 GGACAATGCTACTATTGAAAAGGAAAATGGAAAGGCCACTAATTGTGAACATCCGGGCAT 120 ** * * * ** ******** ************************* * * consensus_1759#0 CGGATTGTGAGGAAACGAATGTTTAAAGGAAAGCACATACACATACATAAGTTGTATATA 124 consensus_1759#1 CGGATTGTAAGGAAACGAATGTTTAAAGGAAAGCACATACACATACATAAGTTGTATATA 180 ******** *************************************************** consensus_1759#0 GATTTTATGTTACTAATCGTAACGTTACTGATTGGTGGCAGTATGAAGGAGCATTGAGTA 184 consensus_1759#1 GATTTTATGTTACTAATCGTAAAGTTACTGATTGGTGGCAGTATGAAGGAGCATTGAGTA 240 ********************** ************************************* consensus_1759#0 AGATTAATTATTAAAAAAAAGGTTTCTGTTAACATTTTTCTTCGTTCTGAAGAAGCAACC 244 consensus_1759#1 AGATTAATTAT-AAAAAAAAGGTTTCTGTTAACATTTTTCTTCGTTCTGAAGAAGCAAAC 299 *********** ********************************************** * consensus_1759#0 ACGTGTGTGAAAATGTAAGATAAGGCTATACATCACACGATTGTTTTTTTTTATATGTAC 304 consensus_1759#1 ACGTGTGTGAAAATGTAAGATAAGGCTATACATCACAAGATTGTTTTTTTT-ATATGCAC 358 ************************************* ************* ***** ** consensus_1759#0 ATTTTTAATTTAATCTTTTCGAAGATTTGCTTAAAAAGGCTCATTTGTACAGGCCTCAAA 364 consensus_1759#1 ATTTTTAATTTAATCTTTTCGAAGATTTGCTTAAAAAGGCTCATTTGTACAGGCCGCAAA 418 ******************************************************* **** consensus_1759#0 AGGTGTATGCGATAAGGTAACGTTTCGTTCATACAAAAGGTAGCGCATATGTATTTAGCA 424 consensus_1759#1 AGGTGTATGCGATAAGGTAACGTTTCGTTC--------------GCATATGTATGTAGCA 464 ****************************** ********** ***** consensus_1759#0 AGCGTTTAATTTACGTTCTACTACGCAAGGTACACACTCCTGTGTGTATT----TGTAGT 480 consensus_1759#1 AGCGTTTAATTTACGTTCTACTACGCAAGGTACACTCTCTTGTGTGTATTAATGTATAGT 524 *********************************** *** ********** * **** consensus_1759#0 TTCGAACGCCGCTTAAGGAATGTTGTAATCTTTTTTCGTTGTTTTCGCTTAAGGTTTATG 540 consensus_1759#1 TT---------------------------------------------------------- 526 ** consensus_1759#0 GTCGGTTTGTTTGTTTAAAAAAATTGTTTGTGCTTTTAAATTTTTGGTTTGGTTGCTGAC 600 consensus_1759#1 ------------------------------------------------------------ consensus_1759#0 GTCCGGAAAATAATTTGTTAAAAGCAGTCGATTTTCGTTACGACCATTAAATGCTGTGTT 660 consensus_1759#1 ------------------------------------------------------------ consensus_1759#0 ATATAGTTTCATAAAGCGTAAGTGAAAACGGTCGCGGCACCCGTTGC 707 consensus_1759#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||