cluster # 177

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Anopheles gambiae
cluster # 177 cluster # 177 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_177#0 length = 633 sequences # 1

consensus_177#1 length = 566 sequences # 1

consensusID : consensus_177#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGAAGAGCGCAAGCCAAACCGTGAGCACTTCTTTGAGAAGCAGCAATACACCGAAAAGGAGTGCCCCGTGAAATACCAGGCTCAGTACGTCGAGCAGGGTGACAAGATTTGCTTCACTAGCCGTCCGCTCCCAACTTGCGCTTCGCAATGCAAGGCTACCGAGAAGGCTCCCAAGTACGTCGATGTCCACTGCCGTGACGC]

[+] EMBL BM590594             [CCGCCCACGCGTCCGCCCACGCGTCCGCGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGAAGAGCGCAAGCCAAACCGTGAGCACTTCTTTGAGAAGCAGCAATACACCGAAAAGGAGTGCCCCGTGAAATACCAGGCTCAGTACGTCGAGCAGGGTGACAAGATTTGCTTCACTAGCCGTCCGCTCCCAACTTGCGCTTCGCAATGCAAGGCTACCGAGAAGGCTCCCAAGTACGTCGATGTCCACTGCCGTGACGC]




>consensus_177#0
CCGCCCACGCGTCCGCCCACGCGTCCGCGACATCAAGATCGTGTTCGACGGATACCGTGC
CCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAA
TGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATA
CTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTT
CACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAA
CGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGA
TCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAA
CTCGTCCTCGTCGGAAGAGCGCAAGCCAAACCGTGAGCACTTCTTTGAGAAGCAGCAATA
CACCGAAAAGGAGTGCCCCGTGAAATACCAGGCTCAGTACGTCGAGCAGGGTGACAAGAT
TTGCTTCACTAGCCGTCCGCTCCCAACTTGCGCTTCGCAATGCAAGGCTACCGAGAAGGC
TCCCAAGTACGTCGATGTCCACTGCCGTGACGC

consensusID : consensus_177#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [CCGACCCGATCGTGTGCGTAACATTAGCCGGCATCGCGAATAAATGAACACGTTTTAACAGTCGTTTAAAGTTCATTTTGGTTTAACCGAGTTCATTTGTCGTTAATTTAAACAGGAATGAACGACAAATGAACTCGGTTAAATTAACGAGCGTCAAAACAGTTAACGACTGCTCGATATCGCATATAGGCAAACACGGGGAAAAAAATCGAGCAGTATAATTAAACGACTGTTAATTTGCATCGCATACGCTCTTGACAGTCGTTTGTTTAACGGCGGCATATGACCAGTCGTTAAAATTAACAAATGAACTCAATGCGATCGCGATGCCAAATTCTAGCAATTTTTAACGACTCTGGTTAATTTTTAACGACTGTTAATTTTAAACCAATTCTTTCGCGATACCAGCTATTGTTTGACGTGAGACGACGGCATTGCGAAATCGTCGTCATTCCGTTTACGCAAGGAGCTAGACTATAATCTAGTTCGGTTGTGTTTTTTTTCTTTCTGGCGAATAACAACAACGTTCACAGAGTAAACTAATTCCAATAATAAAAATCGTATTG]

[+] EMBL BM629986             [CCGACCCGATCGTGTGCGTAACATTAGCCGGCATCGCGAATAAATGAACACGTTTTAACAGTCGTTTAAAGTTCATTTTGGTTTAACCGAGTTCATTTGTCGTTAATTTAAACAGGAATGAACGACAAATGAACTCGGTTAAATTAACGAGCGTCAAAACAGTTAACGACTGCTCGATATCGCATATAGGCAAACACGGGGAAAAAAATCGAGCAGTATAATTAAACGACTGTTAATTTGCATCGCATACGCTCTTGACAGTCGTTTGTTTAACGGCGGCATATGACCAGTCGTTAAAATTAACAAATGAACTCAATGCGATCGCGATGCCAAATTCTAGCAATTTTTAACGACTCTGGTTAATTTTTAACGACTGTTAATTTTAAACCAATTCTTTCGCGATACCAGCTATTGTTTGACGTGAGACGACGGCATTGCGAAATCGTCGTCATTCCGTTTACGCAAGGAGCTAGACTATAATCTAGTTCGGTTGTGTTTTTTTTCTTTCTGGCGAATAACAACAACGTTCACAGAGTAAACTAATTCCAATAATAAAAATCGTATTG]




>consensus_177#1
CCGACCCGATCGTGTGCGTAACATTAGCCGGCATCGCGAATAAATGAACACGTTTTAACA
GTCGTTTAAAGTTCATTTTGGTTTAACCGAGTTCATTTGTCGTTAATTTAAACAGGAATG
AACGACAAATGAACTCGGTTAAATTAACGAGCGTCAAAACAGTTAACGACTGCTCGATAT
CGCATATAGGCAAACACGGGGAAAAAAATCGAGCAGTATAATTAAACGACTGTTAATTTG
CATCGCATACGCTCTTGACAGTCGTTTGTTTAACGGCGGCATATGACCAGTCGTTAAAAT
TAACAAATGAACTCAATGCGATCGCGATGCCAAATTCTAGCAATTTTTAACGACTCTGGT
TAATTTTTAACGACTGTTAATTTTAAACCAATTCTTTCGCGATACCAGCTATTGTTTGAC
GTGAGACGACGGCATTGCGAAATCGTCGTCATTCCGTTTACGCAAGGAGCTAGACTATAA
TCTAGTTCGGTTGTGTTTTTTTTCTTTCTGGCGAATAACAACAACGTTCACAGAGTAAAC
TAATTCCAATAATAAAAATCGTATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_177#0      CCGCCCACGCGTCCGCCCACGCGTCCGCGACATCAAGATCGTGTTCGACGGATACCGTGC 60
consensus_177#1      ---CCGACCCGATCGTGTGCGTAACATTAGC--CGGCATCGCGAATAAATGAACACGTTT 55
                        ** ** **  **    **   *     *  *   **** *    *  **   ***  

consensus_177#0      C--CGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAAC 118
consensus_177#1      TAACAGTCGTTTAAAGTTCATTTTGGTTTAACCGAGTTCATTTGTCGTTAATTTA--AAC 113
                        *  *  **    *  ** *     ** * * * *** *  *** **    **  ***

consensus_177#0      AATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAA 178
consensus_177#1      AGGAATGAACGACAAATGAACTCGGTTAAATT-AACGAGCGTCAAAACAGTTAACGACTG 172
                     *     *** ** *     ***   * *      ** ** *    *   *  * *     

consensus_177#0      TACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTAC 238
consensus_177#1      CTCGATATCGCAT-ATAGGCAAACACGGGGAAAAAAATCGAGCAGTATAATTAAACGACT 231
                       *  *  *** *  ** **   *** ** *  **   *     *     * *  *    

consensus_177#0      TTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGC 298
consensus_177#1      GTTAATTTGCATCGCATACGCTCTTGACAGTCGTTTGTTTAACGGCGGCATATGACCAGT 291
                      * *    * * * *       **   ***   *  **  * *  * * *      * * 

consensus_177#0      AACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTT 358
consensus_177#1      --CGTTAAAATTAACAAATGAACTCAATGCGATCGCGATGCCAAATTCTA-GCAATTTTT 348
                       *** *  *   *  *   * *   * *  * **  *   * * * ***       ***

consensus_177#0      GATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCC 418
consensus_177#1      AACGACTCTGGTTAATTTTTAAC-GACTGTTAATTTTAAACCAATTC-TTTCGCGATACC 406
                      *    ** *  * **  *   * ** * **  *  *   *  **   * *   *** **

consensus_177#0      AACTCGTCCTCGTCGGAAGAGCGCAA----GCCAAACCGTGAGCACTTCTTTGAGAAGCA 474
consensus_177#1      AGCTATTGTTTGACGTGAGACGACGGCATTGCGAAATCGTCGTCATTCCGTTTACGCAAG 466
                     * **  *  * * **  ***   *      ** *** ***   ** * * ** *      

consensus_177#0      GCAATACACCGAAAAGGAGTGCCCCGTGAAATACCAGGCTCAGTACGTCGAGCAGGGTGA 534
consensus_177#1      GAGCTAGACTATAATCTAGT--TCGGTTGTGT-TTTTTTTCTTTCTGGCGAATA--ACAA 521
                     *   ** **   **   ***   * **    *       **  *  * ***  *     *

consensus_177#0      CAAGATTTGCTTCACTAGCCGTCCGCTCCCAACTTGCGCTTCGCAATGCAAGGCTACCGA 594
consensus_177#1      CAACGTTCACAGAGTAAACTA---ATTCCAATAATAAAAATCGTATTG------------ 566
                     ***  **  *      * *       *** *   *     *** * **            

consensus_177#0      GAAGGCTCCCAAGTACGTCGATGTCCACTGCCGTGACGC 633
consensus_177#1      ---------------------------------------