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Anopheles gambiae
cluster # 1771 cluster # 1771       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1771#0 length = 695 sequences # 1  
consensus_1771#1 length = 580 sequences # 1  

consensusID : consensus_1771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence
                              [ATCGCCGAGGTTACTTGGTCCCGCTGCCAAAGCATGATAATACAAACGGATTNTTGCTGGAAAAATCGCAATCCGTNCGAGACATTCTGCAAATGGCATTTGATCTTTGTCCGGAAGAGATCCAAGATGCTGAAACAATGGAACATCAGATAATCTGTCAAGAGGCTGGAGGAGCGATTCGGGGAGTCGACGAGACTGGAACCGGACCGATGCAGGGAATTGTCAACGAACCCGAAAAGTCTCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATATCTGGCGGTACACATACGAATCCACCATCTTCAGCTCCCGGCACCGGCGAAGTATTGGGATGCGGCGATGGCCATAACGGCCCAAATACCGATTCTAGTGCAGNGGTGTGCTGATCATGGCAAATCAAACATTTCCCCAAGCGTGAAGCAACTAACTGAGGGTAATATCTAACATTGATATTAACTCCGATGGCCAATCGGAACAGCAGGCGCAACAGTAATCAACATCGGTGTCACCGGGAAGTAATGCTGGCCAACAACAAACGGTACATACGACGCCTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGACAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCTGCACAGTAGCCAAAGG]

[+] EMBL AL694006             [ATCGCCGAGGTTACTTGGTCCCGCTGCCAAAGCATGATAATACAAACGGATTNTTGCTGGAAAAATCGCAATCCGTNCGAGACATTCTGCAAATGGCATTTGATCTTTGTCCGGAAGAGATCCAAGATGCTGAAACAATGGAACATCAGATAATCTGTCAAGAGGCTGGAGGAGCGATTCGGGGAGTCGACGAGACTGGAACCGGACCGATGCAGGGAATTGTCAACGAACCCGAAAAGTCTCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATATCTGGCGGTACACATACGAATCCACCATCTTCAGCTCCCGGCACCGGCGAAGTATTGGGATGCGGCGATGGCCATAACGGCCCAAATACCGATTCTAGTGCAGNGGTGTGCTGATCATGGCAAATCAAACATTTCCCCAAGCGTGAAGCAACTAACTGAGGGTAATATCTAACATTGATATTAACTCCGATGGCCAATCGGAACAGCAGGCGCAACAGTAATCAACATCGGTGTCACCGGGAAGTAATGCTGGCCAACAACAAACGGTACATACGACGCCTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGACAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCTGCACAGTAGCCAAAGG]


>consensus_1771#0 ATCGCCGAGGTTACTTGGTCCCGCTGCCAAAGCATGATAATACAAACGGATTNTTGCTGG AAAAATCGCAATCCGTNCGAGACATTCTGCAAATGGCATTTGATCTTTGTCCGGAAGAGA TCCAAGATGCTGAAACAATGGAACATCAGATAATCTGTCAAGAGGCTGGAGGAGCGATTC GGGGAGTCGACGAGACTGGAACCGGACCGATGCAGGGAATTGTCAACGAACCCGAAAAGT CTCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATATCTGGCGGTACACATACGAA TCCACCATCTTCAGCTCCCGGCACCGGCGAAGTATTGGGATGCGGCGATGGCCATAACGG CCCAAATACCGATTCTAGTGCAGNGGTGTGCTGATCATGGCAAATCAAACATTTCCCCAA GCGTGAAGCAACTAACTGAGGGTAATATCTAACATTGATATTAACTCCGATGGCCAATCG GAACAGCAGGCGCAACAGTAATCAACATCGGTGTCACCGGGAAGTAATGCTGGCCAACAA CAAACGGTACATACGACGCCTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCA GCCACCACTACACCACAGACAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCC GCCCGGTGATGGACAGCCTGCACAGTAGCCAAAGG



consensusID : consensus_1771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGCTGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCCGGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCTGCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGTCAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCCGTGATGGGAATATCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATATCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGGTGTGCTGATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTATCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTGATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNAACNA]

[+] EMBL BX468431             [AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGCTGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCCGGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCTGCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGTCAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCCGTGATGGGAATATCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATATCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGGTGTGCTGATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTATCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTGATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNAACNA]


>consensus_1771#1 AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGC TGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCC GGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCT GCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGT CAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCCGTGATGGGAATAT CTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATAT CGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGGTGTGCTGA TCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTATC GTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTGAT CGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNAACNA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1771#0      ATCGCCGAGGTTA-CTTGGTCCCGCTGCC--AAAGCATGATAATACAAACGGATTNTTGC 57
consensus_1771#1      AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGC 60
                      *  **     *   *  * *    *****  * ********************** ****

consensus_1771#0      TGGAAAAATCGCAATCCGTNCGAGAC---ATTCT-GCAAATG-GCATTTGATCTTTGTCC 112
consensus_1771#1      TGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCC 120
                      *******************     **   ***** ******* *****************

consensus_1771#0      GGAAG-AGATCCAAG-ATGCTGAAACAATGG-AACATCAGATAAT-CTGTCAAG-AGGCT 167
consensus_1771#1      GGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCT 180
                      ***** ********* *************** ************* ******** *****

consensus_1771#0      G--GAGGAGCGA-TTCGGGGAG-TCGACGAGACTGGAACCGGACCGATGCAGGGAATTGT 223
consensus_1771#1      GCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGT 240
                      *  ********* ********* ****************************** ******

consensus_1771#0      CAACGAA--CCCGAAAAGTC-TCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATA 280
consensus_1771#1      CAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCC-GTGATGGGAATA 299
                      ****  *  *********** ****   ******************* ************

consensus_1771#0      TCTGGCGGTACACATACGAA--TCCAC-CATCTTCAGCTCCCGGCACCGGCGAAG---TA 334
consensus_1771#1      TCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATA 359
                      ****************  **  ****  **************** **********   **

consensus_1771#0      TTGGGATGCGGCGATGG-CCATAACGGCCCAAATACCGA-TTCTAGTGCAGNGGTGTGCT 392
consensus_1771#1      TCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGG-TGTGCT 418
                      * **************  ********************* *********** * ******

consensus_1771#0      GATCATGGCAAATC--AAACAT-TTCCCCAAG-CGTGAAGCAACTAACTGAGGGTAA-TA 447
consensus_1771#1      GATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTA 478
                      ************    ****** ********* ********* *  * ******* * **

consensus_1771#0      TC-TAACATTGA----TATTAACTCCGATGGCCAA-TCGGAACAGC-AGGCGCAACAGTA 500
consensus_1771#1      TCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTG 538
                      ** *********    * * *   * ********* ********** ***** * **** 

consensus_1771#0      ATCAACATCGGTGTCACCGGGAAGTAA-TGCTGGCCAACAACAAACGGTACATACGACGC 559
consensus_1771#1      ATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNA--ACNA---------------- 580
                      *** * ********************* ******** *  ** *                

consensus_1771#0      CTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGA 619
consensus_1771#1      ------------------------------------------------------------
                                                                                  

consensus_1771#0      CAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCT 679
consensus_1771#1      ------------------------------------------------------------
                                                                                  

consensus_1771#0      GCACAGTAGCCAAAGG 695
consensus_1771#1      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)