These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [ATCGCCGAGGTTACTTGGTCCCGCTGCCAAAGCATGATAATACAAACGGATTNTTGCTGGAAAAATCGCAATCCGTNCGAGACATTCTGCAAATGGCATTTGATCTTTGTCCGGAAGAGATCCAAGATGCTGAAACAATGGAACATCAGATAATCTGTCAAGAGGCTGGAGGAGCGATTCGGGGAGTCGACGAGACTGGAACCGGACCGATGCAGGGAATTGTCAACGAACCCGAAAAGTCTCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATATCTGGCGGTACACATACGAATCCACCATCTTCAGCTCCCGGCACCGGCGAAGTATTGGGATGCGGCGATGGCCATAACGGCCCAAATACCGATTCTAGTGCAGNGGTGTGCTGATCATGGCAAATCAAACATTTCCCCAAGCGTGAAGCAACTAACTGAGGGTAATATCTAACATTGATATTAACTCCGATGGCCAATCGGAACAGCAGGCGCAACAGTAATCAACATCGGTGTCACCGGGAAGTAATGCTGGCCAACAACAAACGGTACATACGACGCCTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGACAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCTGCACAGTAGCCAAAGG] [+] EMBL AL694006 [ATCGCCGAGGTTACTTGGTCCCGCTGCCAAAGCATGATAATACAAACGGATTNTTGCTGGAAAAATCGCAATCCGTNCGAGACATTCTGCAAATGGCATTTGATCTTTGTCCGGAAGAGATCCAAGATGCTGAAACAATGGAACATCAGATAATCTGTCAAGAGGCTGGAGGAGCGATTCGGGGAGTCGACGAGACTGGAACCGGACCGATGCAGGGAATTGTCAACGAACCCGAAAAGTCTCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATATCTGGCGGTACACATACGAATCCACCATCTTCAGCTCCCGGCACCGGCGAAGTATTGGGATGCGGCGATGGCCATAACGGCCCAAATACCGATTCTAGTGCAGNGGTGTGCTGATCATGGCAAATCAAACATTTCCCCAAGCGTGAAGCAACTAACTGAGGGTAATATCTAACATTGATATTAACTCCGATGGCCAATCGGAACAGCAGGCGCAACAGTAATCAACATCGGTGTCACCGGGAAGTAATGCTGGCCAACAACAAACGGTACATACGACGCCTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGACAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCTGCACAGTAGCCAAAGG] consensusID : consensus_1771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGCTGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCCGGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCTGCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGTCAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCCGTGATGGGAATATCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATATCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGGTGTGCTGATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTATCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTGATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNAACNA] [+] EMBL BX468431 [AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGCTGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCCGGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCTGCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGTCAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCCGTGATGGGAATATCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATATCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGGTGTGCTGATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTATCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTGATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNAACNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1771#0 ATCGCCGAGGTTA-CTTGGTCCCGCTGCC--AAAGCATGATAATACAAACGGATTNTTGC 57 consensus_1771#1 AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGC 60 * ** * * * * ***** * ********************** **** consensus_1771#0 TGGAAAAATCGCAATCCGTNCGAGAC---ATTCT-GCAAATG-GCATTTGATCTTTGTCC 112 consensus_1771#1 TGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCC 120 ******************* ** ***** ******* ***************** consensus_1771#0 GGAAG-AGATCCAAG-ATGCTGAAACAATGG-AACATCAGATAAT-CTGTCAAG-AGGCT 167 consensus_1771#1 GGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCT 180 ***** ********* *************** ************* ******** ***** consensus_1771#0 G--GAGGAGCGA-TTCGGGGAG-TCGACGAGACTGGAACCGGACCGATGCAGGGAATTGT 223 consensus_1771#1 GCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGT 240 * ********* ********* ****************************** ****** consensus_1771#0 CAACGAA--CCCGAAAAGTC-TCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATA 280 consensus_1771#1 CAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCC-GTGATGGGAATA 299 **** * *********** **** ******************* ************ consensus_1771#0 TCTGGCGGTACACATACGAA--TCCAC-CATCTTCAGCTCCCGGCACCGGCGAAG---TA 334 consensus_1771#1 TCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATA 359 **************** ** **** **************** ********** ** consensus_1771#0 TTGGGATGCGGCGATGG-CCATAACGGCCCAAATACCGA-TTCTAGTGCAGNGGTGTGCT 392 consensus_1771#1 TCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGG-TGTGCT 418 * ************** ********************* *********** * ****** consensus_1771#0 GATCATGGCAAATC--AAACAT-TTCCCCAAG-CGTGAAGCAACTAACTGAGGGTAA-TA 447 consensus_1771#1 GATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTA 478 ************ ****** ********* ********* * * ******* * ** consensus_1771#0 TC-TAACATTGA----TATTAACTCCGATGGCCAA-TCGGAACAGC-AGGCGCAACAGTA 500 consensus_1771#1 TCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTG 538 ** ********* * * * * ********* ********** ***** * **** consensus_1771#0 ATCAACATCGGTGTCACCGGGAAGTAA-TGCTGGCCAACAACAAACGGTACATACGACGC 559 consensus_1771#1 ATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNA--ACNA---------------- 580 *** * ********************* ******** * ** * consensus_1771#0 CTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGA 619 consensus_1771#1 ------------------------------------------------------------ consensus_1771#0 CAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCT 679 consensus_1771#1 ------------------------------------------------------------ consensus_1771#0 GCACAGTAGCCAAAGG 695 consensus_1771#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||