These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CCGCCCACGCGTCCGGCTATTTGTTTTGATCGGCACCACGCGGAAATTGGGACGAATTGTGCCGGGAATCTATATCATTAAATAAATTCACGTGTGTGTCTAGTTTCGTCCCTCATAAAGAAGATCCAAAATGGGTAAGAAAGCGACTACCGAACTGCAAACCCGCCTGCAAGCGATAAACGATGAAATGGAGTTTTATATGGAGCTGTTCAACATCCCATACGCACCGTTCCTCAAGAAGATGATGGACAACATGGTCGTCATTGACCACGTCAAGTAAATTCGTCGCTAACTCAATTGTGTACTTTTCAAAAGTCTCCACTTAATATGTCATCATACAAGCAAACACACACAAAAGAGTATTCCATTTCTTCAGAGATTGTGTGACCACAAGCCTTAAGCGAGCTATTTATATAATACAAAATATCAAAAGAGAGAACAACACCATCCTCACTATCGGAAACAAGACAGACAGCAACGATGGAAACAACCTGGCGAACTTGACAACACCAGCAACACATCTGCGAACAACACCAGCAAAACACTGAGTTTTTCCAGTTGAAGTCAGCAGCAACAGCAGCAGCA] [+] EMBL BM618901 [CCGCCCACGCGTCCGGCTATTTGTTTTGATCGGCACCACGCGGAAATTGGGACGAATTGTGCCGGGAATCTATATCATTAAATAAATTCACGTGTGTGTCTAGTTTCGTCCCTCATAAAGAAGATCCAAAATGGGTAAGAAAGCGACTACCGAACTGCAAACCCGCCTGCAAGCGATAAACGATGAAATGGAGTTTTATATGGAGCTGTTCAACATCCCATACGCACCGTTCCTCAAGAAGATGATGGACAACATGGTCGTCATTGACCACGTCAAGTAAATTCGTCGCTAACTCAATTGTGTACTTTTCAAAAGTCTCCACTTAATATGTCATCATACAAGCAAACACACACAAAAGAGTATTCCATTTCTTCAGAGATTGTGTGACCACAAGCCTTAAGCGAGCTATTTATATAATACAAAATATCAAAAGAGAGAACAACACCATCCTCACTATCGGAAACAAGACAGACAGCAACGATGGAAACAACCTGGCGAACTTGACAACACCAGCAACACATCTGCGAACAACACCAGCAAAACACTGAGTTTTTCCAGTTGAAGTCAGCAGCAACAGCAGCAGCA] consensusID : consensus_178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGCGCATACTGATGCACAGCCTGCAGACGACGAAGAAGCGGATGGCCCAGCTGAAGGAGATCGGCTGCCGGCCCAAATCGCTCATCATTGTGTGCAAAAGCCAGCGGCAGTACGATCTGTTCGTGAAGGAGTGGATCGATGCGAAGGAGCGCAAGACGAAAGTACAACAGTATGGTTAGGAGAACAGGTTGATTGGAAAGGAAGAATGGTTCTTCAGCCCTTTGAGCAATTGTGGAGTGTGATGTAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCAGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGA] [+] EMBL BX604359 [CCGCGCATACTGATGCACAGCCTGCAGACGACGAAGAAGCGGATGGCCCAGCTGAAGGAGATCGGCTGCCGGCCCAAATCGCTCATCATTGTGTGCAAAAGCCAGCGGCAGTACGATCTGTTCGTGAAGGAGTGGATCGATGCGAAGGAGCGCAAGACGAAAGTACAACAGTATGGTTAGGAGAACAGGTTGATTGGAAAGGAAGAATGGTTCTTCAGCCCTTTGAGCAATTGTGGAGTGTGATGTAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCAGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_178#0 CCGCCCACGCGTCCGGCTATTTGTTTTG--ATCGGC-ACCACGCGGA------AATTGGG 51 consensus_178#1 ----CCGCGCATACTGATGCACAGCCTGCAGACGACGAAGAAGCGGATGGCCCAGCTGAA 56 ** *** * * * * ** ** * * * ***** * ** consensus_178#0 ACGAATTG--TGCCGG---GAATCTAT-ATCATTAAATAAATTCACGTGTGTGTCTA-GT 104 consensus_178#1 GGAGATCGGCTGCCGGCCCAAATCGCTCATCATTGTGTGCAAAAGCCAGCGGCAGTACGA 116 ** * ****** **** * ****** * * * * * ** * consensus_178#0 TTCGTCCCTCATAAAGAAGATCCAAAATGGGTAAGAAAGCGACTACCGAACTGCAAACCC 164 consensus_178#1 TCTGTTCGTGAAGGAGTGGATC---GATGCGAAGGAGCGCAAG-ACGAAAGTACAA--CA 170 * ** * * * ** **** *** * * ** ** * ** ** * *** * consensus_178#0 GCCTGCAAGCGATAAACGATGAAATGGAGTTTTATATGGAGCTGTTCAACATCCCATACG 224 consensus_178#1 GTATGGTTAGGAGAACAGGTTGATTGGAA----AGGAAGAATGGTTCTTCAGCCCTT-TG 225 * ** ** ** * * * **** * ** **** ** *** * * consensus_178#0 CACCGTTCCTCAAGAAGATGATG-GACAACATGGTCGTCATTGACCACGTCAAGTAAATT 283 consensus_178#1 AGCAATTGT---GGAGTGTGATGTAACAATGGCGAAGGAGAGGACGACTTCATCACCCCC 282 * ** ** ***** **** * * *** ** *** consensus_178#0 CGTCGCTAACTCAATTGTGTACTTTTCAAAAGTCT-CCACTTAATATGTCATCATACAAG 342 consensus_178#1 GACCAGTGCGTCA--TGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCA 340 * * *** ** * * * ** * * * ** *** ** * *** consensus_178#0 CAAACACACACAAAAGAGTATTCCATTTCTTCAGAGATTGTGTGACCACAAGCCTTAAGC 402 consensus_178#1 TGAACTGCAGTGGGCCAGCTCAGGCCTACTTCACCGA--GTACCACCAGAAGGCTCAGCA 398 *** ** * ***** ** ** **** *** ** * consensus_178#0 GAGCTATTTATATAATACAAAATATCAAAAGAGAGAACAACACCATCCTCACTATCGGAA 462 consensus_178#1 GCACTGCGT-CAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGAC 457 * ** * * ** * * * * ** ** * * **** consensus_178#0 ACAAGACAGACAGCAACGATGGAAACAACCTGGCGAACTTGACAACACCAGCAACACATC 522 consensus_178#1 GTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGT 517 ** *** * ** * ** ** * * * * ** * * * * consensus_178#0 TGCGAACAACACCAGCAAAACACTGAGTTTTTCCAGTTGAAGTCAGCAGCAACAGCAGCA 582 consensus_178#1 CTTCGTCGTCGTCGGATGAAT-CTGATGATTCCAACTCGTCCTCGTCGGA---------- 566 * * * * ** **** ** * * * * ** * * consensus_178#0 GCA 585 consensus_178#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||