cluster # 178

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Anopheles gambiae
cluster # 178 cluster # 178 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_178#0 length = 585 sequences # 1

consensus_178#1 length = 566 sequences # 1

consensusID : consensus_178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CCGCCCACGCGTCCGGCTATTTGTTTTGATCGGCACCACGCGGAAATTGGGACGAATTGTGCCGGGAATCTATATCATTAAATAAATTCACGTGTGTGTCTAGTTTCGTCCCTCATAAAGAAGATCCAAAATGGGTAAGAAAGCGACTACCGAACTGCAAACCCGCCTGCAAGCGATAAACGATGAAATGGAGTTTTATATGGAGCTGTTCAACATCCCATACGCACCGTTCCTCAAGAAGATGATGGACAACATGGTCGTCATTGACCACGTCAAGTAAATTCGTCGCTAACTCAATTGTGTACTTTTCAAAAGTCTCCACTTAATATGTCATCATACAAGCAAACACACACAAAAGAGTATTCCATTTCTTCAGAGATTGTGTGACCACAAGCCTTAAGCGAGCTATTTATATAATACAAAATATCAAAAGAGAGAACAACACCATCCTCACTATCGGAAACAAGACAGACAGCAACGATGGAAACAACCTGGCGAACTTGACAACACCAGCAACACATCTGCGAACAACACCAGCAAAACACTGAGTTTTTCCAGTTGAAGTCAGCAGCAACAGCAGCAGCA]

[+] EMBL BM618901             [CCGCCCACGCGTCCGGCTATTTGTTTTGATCGGCACCACGCGGAAATTGGGACGAATTGTGCCGGGAATCTATATCATTAAATAAATTCACGTGTGTGTCTAGTTTCGTCCCTCATAAAGAAGATCCAAAATGGGTAAGAAAGCGACTACCGAACTGCAAACCCGCCTGCAAGCGATAAACGATGAAATGGAGTTTTATATGGAGCTGTTCAACATCCCATACGCACCGTTCCTCAAGAAGATGATGGACAACATGGTCGTCATTGACCACGTCAAGTAAATTCGTCGCTAACTCAATTGTGTACTTTTCAAAAGTCTCCACTTAATATGTCATCATACAAGCAAACACACACAAAAGAGTATTCCATTTCTTCAGAGATTGTGTGACCACAAGCCTTAAGCGAGCTATTTATATAATACAAAATATCAAAAGAGAGAACAACACCATCCTCACTATCGGAAACAAGACAGACAGCAACGATGGAAACAACCTGGCGAACTTGACAACACCAGCAACACATCTGCGAACAACACCAGCAAAACACTGAGTTTTTCCAGTTGAAGTCAGCAGCAACAGCAGCAGCA]




>consensus_178#0
CCGCCCACGCGTCCGGCTATTTGTTTTGATCGGCACCACGCGGAAATTGGGACGAATTGT
GCCGGGAATCTATATCATTAAATAAATTCACGTGTGTGTCTAGTTTCGTCCCTCATAAAG
AAGATCCAAAATGGGTAAGAAAGCGACTACCGAACTGCAAACCCGCCTGCAAGCGATAAA
CGATGAAATGGAGTTTTATATGGAGCTGTTCAACATCCCATACGCACCGTTCCTCAAGAA
GATGATGGACAACATGGTCGTCATTGACCACGTCAAGTAAATTCGTCGCTAACTCAATTG
TGTACTTTTCAAAAGTCTCCACTTAATATGTCATCATACAAGCAAACACACACAAAAGAG
TATTCCATTTCTTCAGAGATTGTGTGACCACAAGCCTTAAGCGAGCTATTTATATAATAC
AAAATATCAAAAGAGAGAACAACACCATCCTCACTATCGGAAACAAGACAGACAGCAACG
ATGGAAACAACCTGGCGAACTTGACAACACCAGCAACACATCTGCGAACAACACCAGCAA
AACACTGAGTTTTTCCAGTTGAAGTCAGCAGCAACAGCAGCAGCA

consensusID : consensus_178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [CCGCGCATACTGATGCACAGCCTGCAGACGACGAAGAAGCGGATGGCCCAGCTGAAGGAGATCGGCTGCCGGCCCAAATCGCTCATCATTGTGTGCAAAAGCCAGCGGCAGTACGATCTGTTCGTGAAGGAGTGGATCGATGCGAAGGAGCGCAAGACGAAAGTACAACAGTATGGTTAGGAGAACAGGTTGATTGGAAAGGAAGAATGGTTCTTCAGCCCTTTGAGCAATTGTGGAGTGTGATGTAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCAGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGA]

[+] EMBL BX604359             [CCGCGCATACTGATGCACAGCCTGCAGACGACGAAGAAGCGGATGGCCCAGCTGAAGGAGATCGGCTGCCGGCCCAAATCGCTCATCATTGTGTGCAAAAGCCAGCGGCAGTACGATCTGTTCGTGAAGGAGTGGATCGATGCGAAGGAGCGCAAGACGAAAGTACAACAGTATGGTTAGGAGAACAGGTTGATTGGAAAGGAAGAATGGTTCTTCAGCCCTTTGAGCAATTGTGGAGTGTGATGTAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCAGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGA]




>consensus_178#1
CCGCGCATACTGATGCACAGCCTGCAGACGACGAAGAAGCGGATGGCCCAGCTGAAGGAG
ATCGGCTGCCGGCCCAAATCGCTCATCATTGTGTGCAAAAGCCAGCGGCAGTACGATCTG
TTCGTGAAGGAGTGGATCGATGCGAAGGAGCGCAAGACGAAAGTACAACAGTATGGTTAG
GAGAACAGGTTGATTGGAAAGGAAGAATGGTTCTTCAGCCCTTTGAGCAATTGTGGAGTG
TGATGTAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGC
AAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCAGCT
CAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTAC
TACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTAC
AAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCT
GATGATTCCAACTCGTCCTCGTCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_178#0      CCGCCCACGCGTCCGGCTATTTGTTTTG--ATCGGC-ACCACGCGGA------AATTGGG 51
consensus_178#1      ----CCGCGCATACTGATGCACAGCCTGCAGACGACGAAGAAGCGGATGGCCCAGCTGAA 56
                         ** *** * * * *        **    ** * *  * *****      *  **  

consensus_178#0      ACGAATTG--TGCCGG---GAATCTAT-ATCATTAAATAAATTCACGTGTGTGTCTA-GT 104
consensus_178#1      GGAGATCGGCTGCCGGCCCAAATCGCTCATCATTGTGTGCAAAAGCCAGCGGCAGTACGA 116
                         ** *  ******    ****  * ******   *  *    *  * *    ** * 

consensus_178#0      TTCGTCCCTCATAAAGAAGATCCAAAATGGGTAAGAAAGCGACTACCGAACTGCAAACCC 164
consensus_178#1      TCTGTTCGTGAAGGAGTGGATC---GATGCGAAGGAGCGCAAG-ACGAAAGTACAA--CA 170
                     *  ** * * *   **  ****    *** * * **  ** *  **  ** * ***  * 

consensus_178#0      GCCTGCAAGCGATAAACGATGAAATGGAGTTTTATATGGAGCTGTTCAACATCCCATACG 224
consensus_178#1      GTATGGTTAGGAGAACAGGTTGATTGGAA----AGGAAGAATGGTTCTTCAGCCCTT-TG 225
                     *  **     ** **  * *  * ****     *    **   ****  ** *** *  *

consensus_178#0      CACCGTTCCTCAAGAAGATGATG-GACAACATGGTCGTCATTGACCACGTCAAGTAAATT 283
consensus_178#1      AGCAATTGT---GGAGTGTGATGTAACAATGGCGAAGGAGAGGACGACTTCATCACCCCC 282
                       *  **      **   *****  ****    *  *     *** ** ***        

consensus_178#0      CGTCGCTAACTCAATTGTGTACTTTTCAAAAGTCT-CCACTTAATATGTCATCATACAAG 342
consensus_178#1      GACCAGTGCGTCA--TGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCA 340
                        *  *   ***  ** * *    * ** * * * ** ***  ** *   ***      

consensus_178#0      CAAACACACACAAAAGAGTATTCCATTTCTTCAGAGATTGTGTGACCACAAGCCTTAAGC 402
consensus_178#1      TGAACTGCAGTGGGCCAGCTCAGGCCTACTTCACCGA--GTACCACCAGAAGGCTCAGCA 398
                       ***           **        * *****  **  **   **** *** ** *   

consensus_178#0      GAGCTATTTATATAATACAAAATATCAAAAGAGAGAACAACACCATCCTCACTATCGGAA 462
consensus_178#1      GCACTGCGT-CAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGAC 457
                     *  **   *  *     **  *   *    *  *   ** ** *   *       **** 

consensus_178#0      ACAAGACAGACAGCAACGATGGAAACAACCTGGCGAACTTGACAACACCAGCAACACATC 522
consensus_178#1      GTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGT 517
                        **    *** * ** *    **  ** * *     * *    ** *  *  *  *  

consensus_178#0      TGCGAACAACACCAGCAAAACACTGAGTTTTTCCAGTTGAAGTCAGCAGCAACAGCAGCA 582
consensus_178#1      CTTCGTCGTCGTCGGATGAAT-CTGATGATTCCAACTCGTCCTCGTCGGA---------- 566
                           *  *  * *   **  ****   ** * * * *   **  * *           

consensus_178#0      GCA 585
consensus_178#1      ---