These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 982 fasta sequence [CCCGAGGTTAAAGTCACTTTCTCATTCTGCTGAATCGCAAACGGTTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCTGTCGCCGACCACTGATGCTTGATTAACAACAGCCCTGGTGACTGGTGTAACACATCTGCTAGTCNGTGCCCTGACTGGGCGGGCAGCACTCGCAGGCTGCTCACATCGGGGCGGGTGTTGCGCGTTAAGCGGTATCGGAGGCCTTTGGCTTTGCTTGCTGGCCTGNCCCTGGAAAACCTGAACTGCTTTAACACTGGGGATTCGNGGTTTTACCAAACAAAGGTTACCCCCGGTGTTGGCCATGGCAAAGGCCGGTTACCTGGTGCACAAAACGCCAATTCCTTGGNATCTTTGGCCAATTCTTGGCTACCCCGGGGAATTACCGGAAGTTAAACCAGTGGACTGGACTTCCTTAAAGNGGATTTGGACCAAAGGACAGGTTTGCCNGGGGGAAAAAACACTTTTGGCGTTATTAACACCACCCAGATTATGCACNCGAGTTTATGGGCACAACCATTACCCANGGCGTTTTGACNTNTAGCGAAAACACCAGAGGGCNTTGGGGCCTGGAGGAANTTCNAATTACCTNTTTGGAGCACACGGGGGACACNCCAAAGNGAAGGGGGGTTTAATTTTTTGGGCGATATTTACCNGAGTTTTAGGCCTTTTNNGGCTAGCGGAGAGAAGNCCGCCAAAAAAAGCACCCAAACCGAGGCAGGAAAGAGCCTTTTGGGGNAACTGGACCCCCCACGGTNTACCTTTNGCCTACANAGTAATCTGTCNGTGAGCCTTTAGGGTAATTTTGGAAACAACGTGGCTTTTGCAATTTAACCGAAAGGTGAGCTGGACCGTTTAAAGACCNTAGNTAGTGACGAAAANCCAGG] [+] EMBL AL694165 [CCCGAGGTTAAAGTCACTTTCTCATTCTGCTGAATCGCAAACGGTTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCTGTCGCCGACCACTGATGCTTGATTAACAACAGCCCTGGTGACTGGTGTAACACATCTGCTAGTCNGTGCCCTGACTGGGCGGGCAGCACTCGCAGGCTGCTCACATCGGGGCGGGTGTTGCGCGTTAAGCGGTATCGGAGGCCTTTGGCTTTGCTTGCTGGCCTGNCCCTGGAAAACCTGAACTGCTTTAACACTGGGGATTCGNGGTTTTACCAAACAAAGGTTACCCCCGGTGTTGGCCATGGCAAAGGCCGGTTACCTGGTGCACAAAACGCCAATTCCTTGGNATCTTTGGCCAATTCTTGGCTACCCCGGGGAATTACCGGAAGTTAAACCAGTGGACTGGACTTCCTTAAAGNGGATTTGGACCAAAGGACAGGTTTGCCNGGGGGAAAAAACACTTTTGGCGTTATTAACACCACCCAGATTATGCACNCGAGTTTATGGGCACAACCATTACCCANGGCGTTTTGACNTNTAGCGAAAACACCAGAGGGCNTTGGGGCCTGGAGGAANTTCNAATTACCTNTTTGGAGCACACGGGGGACACNCCAAAGNGAAGGGGGGTTTAATTTTTTGGGCGATATTTACCNGAGTTTTAGGCCTTTTNNGGCTAGCGGAGAGAAGNCCGCCAAAAAAAGCACCCAAACCGAGGCAGGAAAGAGCCTTTTGGGGNAACTGGACCCCCCACGGTNTACCTTTNGCCTACANAGTAATCTGTCNGTGAGCCTTTAGGGTAATTTTGGAAACAACGTGGCTTTTGCAATTTAACCGAAAGGTGAGCTGGACCGTTTAAAGACCNTAGNTAGTGACGAAAANCCAGG] consensusID : consensus_1798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CTGTGGTTGCTGTTGTTGTTTACTCCGCCAGTGCCGGTTGATGACAGCCGGTCCGGACGCGCCGTGTGTTGATCGCCCTGCCGCTCCACACCCGTCCAGTGGCCGTTCTGCGCATCACGAGCCAGCTGCTTCAACATGCGACAAACACATCCCACCACGTACGAGCTGACCAGCTCGTCGACAGATTCACGCACTGATCCAGAACTGCAACGGCTGCTAGAATCGACCTGGTCCGAACGGCATGATGCCGGCGTTGGCTTTCGCTACCGTCTGCACATAGAACGTGAGCGTATTGCGGAAGGAAAGTTCAACTTTCTCATTCTGCTGAATCGCAAACGGCTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCGTCGCCGACCACGATGCTGATTAACAACAGCCCGGTGACGGTGTACCACTCGCTAGTCGTGCCCGACCGGGCGGGCCAGCACTCGCAGCTGCTCACATCGGGCGGTGTGCGCGTAGCGTTCGAGCTGCTGCTGCGCCTGCCCGACCGACGCTACCGGATCG] [+] EMBL BX624901 [CTGTGGTTGCTGTTGTTGTTTACTCCGCCAGTGCCGGTTGATGACAGCCGGTCCGGACGCGCCGTGTGTTGATCGCCCTGCCGCTCCACACCCGTCCAGTGGCCGTTCTGCGCATCACGAGCCAGCTGCTTCAACATGCGACAAACACATCCCACCACGTACGAGCTGACCAGCTCGTCGACAGATTCACGCACTGATCCAGAACTGCAACGGCTGCTAGAATCGACCTGGTCCGAACGGCATGATGCCGGCGTTGGCTTTCGCTACCGTCTGCACATAGAACGTGAGCGTATTGCGGAAGGAAAGTTCAACTTTCTCATTCTGCTGAATCGCAAACGGCTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCGTCGCCGACCACGATGCTGATTAACAACAGCCCGGTGACGGTGTACCACTCGCTAGTCGTGCCCGACCGGGCGGGCCAGCACTCGCAGCTGCTCACATCGGGCGGTGTGCGCGTAGCGTTCGAGCTGCTGCTGCGCCTGCCCGACCGACGCTACCGGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1798#0 CCCGAGGTTAAAGTCACTTTCTCATTCTGCTGAATCGCAAACGGTTGACAGAGCGCCGGC 60 consensus_1798#1 ------------------------------------------------------------ consensus_1798#0 AGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCG 120 consensus_1798#1 ------------------------------------------------------------ consensus_1798#0 TCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCTGTCGCCGACCACTGATGCTTGA 180 consensus_1798#1 ------------------------------------------------------------ consensus_1798#0 TTAACAACAGCCCTGGTGACTGGTGTAACACATCTGCTAGTCNGTGCCCTGACTGGGCGG 240 consensus_1798#1 ------------------------------------------------------------ consensus_1798#0 GCAGCACTCGCAGGCTGCTCACATCGGGGCGGGTGTTGCGCGTTAAGCGGTATCGGAGGC 300 consensus_1798#1 -----------------------------------------------------CTGTGGT 7 * * ** consensus_1798#0 CTTTGGCTTTGCTTGCTGGCCTGNCCCTGGAAAACCTGAACTGCTTTAA---CACTGGGG 357 consensus_1798#1 TGCTGTTGTTGTTTACTCCGCCAGTGCCGGTTGATGACAGCCGGTCCGGACGCGCCGTGT 67 ** *** ** ** * * ** * * * * * * * * * consensus_1798#0 ATTCGNGGTTTTACCAAACAAAGGTTACCCCCGGTGTTGGCCATGGCAAAGGCCGGTTAC 417 consensus_1798#1 GTTGATCGCCCTGCCGCTCCACA--CCCGTCCAGTGGCCGTTCTGCGCATCACGAGCCAG 125 ** * * ** * * * ** *** * ** * * * * consensus_1798#0 CTGGTGCACAAAACGCCAATTCCTTGGNATCTTTGGCCAATTCTTGGCTACCCCGGGGAA 477 consensus_1798#1 CTGCTTCAACATGCGACAAACACATCCCACCACGTACGAGCTGACCAGCTCGTCGACAGA 185 *** * ** * ** *** * * * * * * * * ** * consensus_1798#0 TTACCGGAAGTTAAACCAGTGGACTGGACTTCCTTAAAGNGGATTTGGACCAAAGGACAG 537 consensus_1798#1 TTCACGCA--CTGATCCAGAACTGCAACGGCTGCTAGAATCGACCTGGTCCGAACGGCAT 243 ** ** * * * **** ** * ** *** ** ** * ** consensus_1798#0 GTTTGCCNGGGGGAAAAAACACTTTTGGCGTTATTAACACCACCCAGATTATGCACNCGA 597 consensus_1798#1 GAT-GCCGGCGTTGG------CTTT---CGCTACCGTCTGCACATAGAACGTGAGCGTA- 292 * * *** * * **** ** ** * *** *** ** * consensus_1798#0 GTTTATGGGCACAACCATTACCCANGGCGTTTTGACNTNTAGCGAAAACACCAGAGGGCN 657 consensus_1798#1 --TTGCGGAAGGAAAGTTCAACTTTCTCATTCTGCTGAATCGCAAACGGCTGACAGAGCG 350 ** ** ** * * * * ** ** * ** ** * ** ** consensus_1798#0 TTGGGGCCTGGAGGAANTTCNAATTACCTNTTTGGAGCACACGGGGGACACNCCAAAGNG 717 consensus_1798#1 CCGGCAGCCGCAAGCATTCCA--------GCTCGATGCAC-CGTTCGATCCGTCCC---- 397 ** * * * * * * * * * **** ** ** * * consensus_1798#0 AAGGGGGGTTTAATTTTTTGGGCGAT-ATTTACCNGAGTTTTAGGCCTTTTNNGGCTAGC 776 consensus_1798#1 ------GGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCAC 451 ******* *** *** ** * *** * ** * * * * consensus_1798#0 GGAGAGAAGNCCGCCAAAAAAAGCACCCAAACCGAGGCAGGAAAGAGCCTTTTGGGGNAA 836 consensus_1798#1 CGTC-GCCGACCACGATGCTGATTAACAACAGCCCGGTGACGGTGTACCACTCGCTAGTC 510 * * * ** * * * * * * * * ** * ** * * consensus_1798#0 CTGGACCCCCCA-CGGTNTACCTTTNGCCTACANAGTAATCTGTCNGTGAGCCTTTAGGG 895 consensus_1798#1 GTGCCCGACCGGGCGGGCCAGCACTCGCAGCTGCTCACATCGGGCGGTGTGC-----GCG 565 ** * ** *** * * * ** *** * * *** ** * * consensus_1798#0 TAATTTTGGAAACAACGTGGCTTTTGCAATTTAACCGAAAGGTGAGCTGGACCGTTTAAA 955 consensus_1798#1 TAGCGTTCGAGCTGCTGCTGCGCCTGC---CCGACCGACGC---TACCGGATCG------ 613 ** ** ** * ** *** ***** * *** ** consensus_1798#0 GACCNTAGNTAGTGACGAAAANCCAGG 982 consensus_1798#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||