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Anopheles gambiae
cluster # 1810 cluster # 1810       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1810#0 length = 704 sequences # 1  
consensus_1810#1 length = 524 sequences # 1  

consensusID : consensus_1810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence
                              [TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGGAGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAACCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCTCCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCCTCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCAAGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATACAGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG]

[+] EMBL BX605141             [TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGGAGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAACCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCTCCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCCTCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCAAGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATACAGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG]


>consensus_1810#0 TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGG AGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAA CCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG AGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCT CCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCA ACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCC TCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGA CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC CGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCA AGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATAC AGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG



consensusID : consensus_1810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence
                              [CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC]

[+] EMBL BM604860             [CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC]


>consensus_1810#1 CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGG CGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGG TGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGA TCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACG AGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGG CGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACG TGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACG ACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGC TGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1810#0      TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGG 60
consensus_1810#1      ------------------------------------------------------------
                                                                                  

consensus_1810#0      AGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAA 120
consensus_1810#1      ------------------------------------CCGCCCACGCGTCCG---CGAAAA 21
                                                           ***  ** **   *   ******

consensus_1810#0      CCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG 180
consensus_1810#1      CCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG 81
                      ************************* **********************************

consensus_1810#0      AGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCT 240
consensus_1810#1      AGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCT 141
                      ****** * ********************************** ****************

consensus_1810#0      CCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCA 300
consensus_1810#1      CCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCA 201
                      **** *********************************************** *******

consensus_1810#0      ACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCC 360
consensus_1810#1      ACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCC 261
                      ******************************* ********** *****************

consensus_1810#0      TCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC 420
consensus_1810#1      TCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC 321
                      **** *******************************************************

consensus_1810#0      AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGA 480
consensus_1810#1      AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGA 381
                      **************************************************** *******

consensus_1810#0      CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC 540
consensus_1810#1      CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC 441
                      ************************************************************

consensus_1810#0      CGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCA 600
consensus_1810#1      CGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGA 501
                      ********************* ***********************************  *

consensus_1810#0      AGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATAC 660
consensus_1810#1      AGAAGAAACTGCTGCGCAAGTGC------------------------------------- 524
                      ******* ***************                                     

consensus_1810#0      AGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG 704
consensus_1810#1      --------------------------------------------
                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)