These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGGAGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAACCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCTCCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCCTCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCAAGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATACAGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG] [+] EMBL BX605141 [TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGGAGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAACCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCTCCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCCTCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCAAGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATACAGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG] consensusID : consensus_1810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC] [+] EMBL BM604860 [CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1810#0 TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGG 60 consensus_1810#1 ------------------------------------------------------------ consensus_1810#0 AGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAA 120 consensus_1810#1 ------------------------------------CCGCCCACGCGTCCG---CGAAAA 21 *** ** ** * ****** consensus_1810#0 CCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG 180 consensus_1810#1 CCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG 81 ************************* ********************************** consensus_1810#0 AGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCT 240 consensus_1810#1 AGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCT 141 ****** * ********************************** **************** consensus_1810#0 CCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCA 300 consensus_1810#1 CCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCA 201 **** *********************************************** ******* consensus_1810#0 ACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCC 360 consensus_1810#1 ACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCC 261 ******************************* ********** ***************** consensus_1810#0 TCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC 420 consensus_1810#1 TCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC 321 **** ******************************************************* consensus_1810#0 AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGA 480 consensus_1810#1 AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGA 381 **************************************************** ******* consensus_1810#0 CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC 540 consensus_1810#1 CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC 441 ************************************************************ consensus_1810#0 CGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCA 600 consensus_1810#1 CGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGA 501 ********************* *********************************** * consensus_1810#0 AGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATAC 660 consensus_1810#1 AGAAGAAACTGCTGCGCAAGTGC------------------------------------- 524 ******* *************** consensus_1810#0 AGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG 704 consensus_1810#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||