cluster # 1810

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Anopheles gambiae
cluster # 1810 cluster # 1810 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1810#0 length = 704 sequences # 1

consensus_1810#1 length = 524 sequences # 1

consensusID : consensus_1810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGGAGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAACCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCTCCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCCTCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCAAGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATACAGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG]

[+] EMBL BX605141             [TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGGAGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAACCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCTCCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCCTCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCAAGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATACAGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG]




>consensus_1810#0
TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGG
AGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAA
CCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG
AGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCT
CCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCA
ACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCC
TCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC
AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGA
CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC
CGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCA
AGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATAC
AGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG

consensusID : consensus_1810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC]

[+] EMBL BM604860             [CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC]




>consensus_1810#1
CCGCCCACGCGTCCGCGAAAACCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGG
CGGCGGGTGAGGATGAGCAGGAGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGG
TGCTGCCGGAGGATGTGTTCTCCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGA
TCCGCGTGATGGATCCGATCAACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACG
AGGTGGTCCTGTCGCTCGCCCTCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGG
CGGGCGTCGCGAAAGACCTGCAGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACG
TGTACAAGGTCGACAGCCAGACGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACG
ACGCGCCGGGAGCGCTGTGCCCGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGC
TGCGCATCTACGACCTCGTGAAGAAGAAACTGCTGCGCAAGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1810#0      TGTTCAACCAGATCACCTTCCCGCTGGAGTACACCCCGAAACGGTTCGCCATCCATCAGG 60
consensus_1810#1      ------------------------------------------------------------
                                                                                  

consensus_1810#0      AGACGGGCAAGCTGATCATTAGCGAAACCGACCACAACGCGTACACGGAGGAAACGAAAA 120
consensus_1810#1      ------------------------------------CCGCCCACGCGTCCG---CGAAAA 21
                                                           ***  ** **   *   ******

consensus_1810#0      CCGTGCGCAAGAAGCAGATGGCGGACGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG 180
consensus_1810#1      CCGTGCGCAAGAAGCAGATGGCGGATGAGATGCGTGAGGCGGCGGGTGAGGATGAGCAGG 81
                      ************************* **********************************

consensus_1810#0      AGCTGGCGAACGAGATGGCGGACGCGTTCATCAACGAGGTGCTACCGGAGGATGTGTTCT 240
consensus_1810#1      AGCTGGGGGACGAGATGGCGGACGCGTTCATCAACGAGGTGCTGCCGGAGGATGTGTTCT 141
                      ****** * ********************************** ****************

consensus_1810#0      CCTCCCCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGACCCGATCA 300
consensus_1810#1      CCTCACCGAAGGCGGGCACGGGCATGTGGGCGTCGCAGATCCGCGTGATGGATCCGATCA 201
                      **** *********************************************** *******

consensus_1810#0      ACGGCCACACGTACTCGAAGGTACAGCTGGCGCAGAACGAGGCGGTCCTGTCGCTCGCCC 360
consensus_1810#1      ACGGCCACACGTACTCGAAGGTACAGCTGGCCCAGAACGAGGTGGTCCTGTCGCTCGCCC 261
                      ******************************* ********** *****************

consensus_1810#0      TCGTACGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC 420
consensus_1810#1      TCGTGCGGTTCGCCGTCGACCAGAAGTGGTACGTGGTGGCGGGCGTCGCGAAAGACCTGC 321
                      **** *******************************************************

consensus_1810#0      AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGATAGCCAGA 480
consensus_1810#1      AGATAAACCCGAAAATCAGCGGCGGCGGCTTTATCGACGTGTACAAGGTCGACAGCCAGA 381
                      **************************************************** *******

consensus_1810#0      CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC 540
consensus_1810#1      CGCACCAGCTCGAGCACATGCATCGCACGGAGATCGACGACGCGCCGGGAGCGCTGTGCC 441
                      ************************************************************

consensus_1810#0      CGTTCCAGGGCCGGCTGCTGGCCGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGGCA 600
consensus_1810#1      CGTTCCAGGGCCGGCTGCTGGACGGCATCGGCAAGGTGCTGCGCATCTACGACCTCGTGA 501
                      ********************* ***********************************  *

consensus_1810#0      AGAAGAAGCTGCTGCGCAAGTGCGAAAACAAACACATTCCCAACCAGATCGTGAACATAC 660
consensus_1810#1      AGAAGAAACTGCTGCGCAAGTGC------------------------------------- 524
                      ******* ***************                                     

consensus_1810#0      AGGGCATGGGGCAGCGTGTGTACGTGTCGGTGCAGGAGTCGGTG 704
consensus_1810#1      --------------------------------------------