These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGTGAATATTTGTCGATTTTGTCTCAGTGAGGACGAAAACTACTTAATTCCGGTGCAAGATGTATTAGATTTTGAGCTTACCATCGAAGATTTAGTCCGTTTCACCGGCATACAGCTCAACGATGAACACAAAGCATCCTGTGTGGTGTGTCTAGAATGTACAAACAAGCTGAAAATATCGTCCACCTTCCGGAACGCCTGCCTGAGGAACGATGCGCTCTTCCATGCCCTGTGCCGTGTTGTGCTCGACTCCCGCGTTCAACAGACCTACGATGAAACGGTCGAATATTTGGAAAGCGATTTTGAAGGGGAAGCAAACTCCGACACCTACGCCGAAGACGAACCAATCGCAACGGACATTTGTCCTAGTGAAGATGGCTCGAGTCCACTGCCAAGTGCCGTAAAAGAACTCCAGCACCGTACGCAGCCCAGTAGCGTGGTTTCGATTGCGAGCACCATCGAGGAAGCGAACAGTGAGGACGAGCTGTTTGGATATTCGGCCAACTACATCAAGCCAGGCGAAATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGCCTCAACCCGAAGCACGCTCCCACCGCTCCCCATCCG] [+] EMBL BM594627 [CCGTGAATATTTGTCGATTTTGTCTCAGTGAGGACGAAAACTACTTAATTCCGGTGCAAGATGTATTAGATTTTGAGCTTACCATCGAAGATTTAGTCCGTTTCACCGGCATACAGCTCAACGATGAACACAAAGCATCCTGTGTGGTGTGTCTAGAATGTACAAACAAGCTGAAAATATCGTCCACCTTCCGGAACGCCTGCCTGAGGAACGATGCGCTCTTCCATGCCCTGTGCCGTGTTGTGCTCGACTCCCGCGTTCAACAGACCTACGATGAAACGGTCGAATATTTGGAAAGCGATTTTGAAGGGGAAGCAAACTCCGACACCTACGCCGAAGACGAACCAATCGCAACGGACATTTGTCCTAGTGAAGATGGCTCGAGTCCACTGCCAAGTGCCGTAAAAGAACTCCAGCACCGTACGCAGCCCAGTAGCGTGGTTTCGATTGCGAGCACCATCGAGGAAGCGAACAGTGAGGACGAGCTGTTTGGATATTCGGCCAACTACATCAAGCCAGGCGAAATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGCCTCAACCCGAAGCACGCTCCCACCGCTCCCCATCCG] consensusID : consensus_1813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [AATNCCCGACGTTTATTTGGATATTCGGCCAACTACATCAAGCCAGGCGANATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGGCCTCAACCGAAGCACGCTCCCACCGCTCCCCATCCGAGAGAGCGCGGAAAGCGAAGACTGTACATGTGTGAAAAGTGCGCCCTCATTGTGAAGCACCTGCCAACGCACATGCAAGTACACGAGGAGACGGCACATTCGCCTGCCCGTACTGTCCGGCCAAAATGAAGCAGAAAAACAACATCTCCCAGCACATACTACAGGTGCACTACAAGGCCATCTGCAGGACGTGCAAAATATGCGGCCAAAGGCTTCGTTCATCACAAAACGTACCGATATCATATGGTTGGGTCGTGCTAGCAGAGACAAATTGCGCCGGAATGTGCCAGTAACAATGTATGCTACTTTTTCGTTTCAGCTTACCCACGAGGGTGAAGGGAAACGGTTCGGCTGCAGGATTGCTCGAAAACGTTCCCGAACGCCATCTACTTACGCGACCATTTTAATCGAATCCACAATGCGGCTAGAACGGGGAAGACGAATGCTGATCGGGACCCAAA] [+] EMBL AL694219 [AATNCCCGACGTTTATTTGGATATTCGGCCAACTACATCAAGCCAGGCGANATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGGCCTCAACCGAAGCACGCTCCCACCGCTCCCCATCCGAGAGAGCGCGGAAAGCGAAGACTGTACATGTGTGAAAAGTGCGCCCTCATTGTGAAGCACCTGCCAACGCACATGCAAGTACACGAGGAGACGGCACATTCGCCTGCCCGTACTGTCCGGCCAAAATGAAGCAGAAAAACAACATCTCCCAGCACATACTACAGGTGCACTACAAGGCCATCTGCAGGACGTGCAAAATATGCGGCCAAAGGCTTCGTTCATCACAAAACGTACCGATATCATATGGTTGGGTCGTGCTAGCAGAGACAAATTGCGCCGGAATGTGCCAGTAACAATGTATGCTACTTTTTCGTTTCAGCTTACCCACGAGGGTGAAGGGAAACGGTTCGGCTGCAGGATTGCTCGAAAACGTTCCCGAACGCCATCTACTTACGCGACCATTTTAATCGAATCCACAATGCGGCTAGAACGGGGAAGACGAATGCTGATCGGGACCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1813#0 --------------CCGTGAATATTTGTCGATTTTGTCTCAGTGAGGACGAAAACTACTT 46 consensus_1813#1 AATNCCCGACGTTTATTTGGATATTCGGCCAACTACATCAAGCCAGGCGANATACTGTAT 60 ** ***** * * * * ** *** * *** * consensus_1813#0 A-----ATTCCGGTGCA--AGATGTATTAGATTTTGAGCTTACCATCGAAGATTTAGTCC 99 consensus_1813#1 GCAGAGGATGTGGTGCACCGGTCGTACGTGGATTGGAACACCAGGCCTCAACCGAAGCAC 120 * ****** * *** * ** ** * * * ** * consensus_1813#0 GTTTCACCGGCATACAGCTCAACGATGAACACAAAGCATCCTGTGTG-GTGTGTCTAGAA 158 consensus_1813#1 GCTCCCACCGCTCCCCATCCGAGAGAGCGCGGAAAGCGAAGACTGTACATGTGTGAAAAG 180 * * * * ** * * * * * ***** *** ***** * * consensus_1813#0 TGTACAAACAAGCTGAAAATATCGTCCACCTTCCGGAACGCCTGCCTGAGGA-ACGATGC 217 consensus_1813#1 TGCGCCCTCATTGTGAAGCACCTGCCAACGCACATGCAAG--TACACGAGGAGACGGCAC 238 ** * ** **** * * ** * * * * * * ***** *** * consensus_1813#0 GCTCTTCCATGCCCTGTGCCGTGTTGTGCTCGACTCCCGCGTTCAACAGACCTACGATGA 277 consensus_1813#1 ATTCGCCTGCCCGTACTGTCCGGCCAAAAT-GAAGCAGAAAAACAACATCTCCCAGCACA 297 ** * * ** * * * ** * ***** * * * consensus_1813#0 AACGGTCGAATATTTGGAAAGCGATTTTGAAGGGGAAGCAAACTCCGACACCTACGCCGA 337 consensus_1813#1 TACTACAGGTGCACTACAAGGCCATCT-GCAGGACGTGCAAAATATGCGGCCAA-----A 351 ** * * ** ** ** * * *** ***** * * ** * * consensus_1813#0 AGACGAACCAATCGCAACGGACATTTGTCCTAGTGAAGATGGCTCGAGTC--CACTGCCA 395 consensus_1813#1 GGCTTCGTTCATCACAAAACGTACCGATATCA-TATGGTTGGGTCGTGCTAGCAGAGACA 410 * *** *** * * * * * *** *** * ** * ** consensus_1813#0 AGTGCCGTAAAAGAACTCCAGCACCGTACGCAGCCCAGTAGCGTGGTTTCGATTGCGAGC 455 consensus_1813#1 AATTGCGCCGGAATGTGCCAGTAACA-ATGTATGCTACTTTTTCGTTTCAGCTTACC--C 467 * * ** * **** * * * * * * * * * ** * ** * * consensus_1813#0 ACCATCGAGGAAGCGAACAGTGAGGACG---AGCTGTTTGGATATTCGGCC-AACTACAT 511 consensus_1813#1 ACGAGGGTGAAGGGAAACGGTTCGGCTGCAGGATTGCTCGAAAACGTTCCCGAACGCCAT 527 ** * * * * * *** ** ** * ** * * * * ** *** *** consensus_1813#0 CAAGCCAGGCGAAATACTGTATGCAGAGGATGTGGTGCACCGGTCGTACGTGGATTG-GA 570 consensus_1813#1 CTACTTACGCGA----CCATTTTAATCGAATCCACAATGCGGCTAGAACGGGGAAGACGA 583 * * * **** * * * * * ** * * * * *** *** ** consensus_1813#0 ACACCAGCCTCAACCCGAAGCACGCTCCCACCGCTCCCCATCCG 614 consensus_1813#1 ATGCTGATCGGGACCCAAA------------------------- 602 * * * **** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||