These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [CCGCGAGCAGTGGACCGACGGCGCTCGGCAGTGGGTTCGGTGGACCGGCGGCGGGTGGTTTCGGTGGATTCCAGCAGGCCGGCAGCACGTTCCCGCCCGCCAACGGGGCCGGTATGATGCCGGCGAACGCGTTCGGTGCGTTCCAAACGTTCCCGACCGGTGCCGGACCACAACCGCCGCCCGGACAGTACGCGATGATGGGTGCGGGCGTACCGCCGCAGATGGTGTTCCACAGCAACAATGGTGCGATGGGCGGTGCTCCAGGTGGCATGATGGCACAGCAGGGCGCGATGTTTAACGCACAGCAGGTTGGCGTTCCGCCGATGGTTCCAGCGTACGGTGCGATGGCGGGCCAGTACGGTGCTGCCAGTGGTTTCCCGCCCATGATGGGTATGCAGCCCCCCCAGCCAGGGCAGGTAATGGGCCCGGGAGGAGGCGGAGTGGCTGCGTTTGCTAACTTTCCTAAAGCCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGA] [+] EMBL BM627610 [CCGCGAGCAGTGGACCGACGGCGCTCGGCAGTGGGTTCGGTGGACCGGCGGCGGGTGGTTTCGGTGGATTCCAGCAGGCCGGCAGCACGTTCCCGCCCGCCAACGGGGCCGGTATGATGCCGGCGAACGCGTTCGGTGCGTTCCAAACGTTCCCGACCGGTGCCGGACCACAACCGCCGCCCGGACAGTACGCGATGATGGGTGCGGGCGTACCGCCGCAGATGGTGTTCCACAGCAACAATGGTGCGATGGGCGGTGCTCCAGGTGGCATGATGGCACAGCAGGGCGCGATGTTTAACGCACAGCAGGTTGGCGTTCCGCCGATGGTTCCAGCGTACGGTGCGATGGCGGGCCAGTACGGTGCTGCCAGTGGTTTCCCGCCCATGATGGGTATGCAGCCCCCCCAGCCAGGGCAGGTAATGGGCCCGGGAGGAGGCGGAGTGGCTGCGTTTGCTAACTTTCCTAAAGCCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGA] consensusID : consensus_1816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [GCAGAATNGCCCCGAGGNTTAAAGCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGACCTTAGCAATCCCCTCGGGGCCGACTAACTTATCTAGAGCCTCCAAACACACGCGCGCGCGCAGCCCCTATTCCCCGTCCGAAAGCCAAAAGCAGTGGAAAAAACGATTAAAAAACCAGTTTACAGTACCGAAACCGTTAAGCGTTGTGTACTAAAGCCGGGTAGGGGAAGGAACCTAAAAACACTATCACAACAGGAAGCAGGAACGGGGAAGTAAAATGGGTGCGAGCTANCGGGCGAGCGGGCGCGGCCAGGATTTTAGGGGCATTAACAACCTTAATTTAGCTTAACGGAAAACATTGAAGCAATTGAAAACTATGGAAAAGCATAAGCAGA] [+] EMBL AL694230 [GCAGAATNGCCCCGAGGNTTAAAGCGTCCCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGCTAAGCAATCAGTTCGGCACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGACCTTAGCAATCCCCTCGGGGCCGACTAACTTATCTAGAGCCTCCAAACACACGCGCGCGCGCAGCCCCTATTCCCCGTCCGAAAGCCAAAAGCAGTGGAAAAAACGATTAAAAAACCAGTTTACAGTACCGAAACCGTTAAGCGTTGTGTACTAAAGCCGGGTAGGGGAAGGAACCTAAAAACACTATCACAACAGGAAGCAGGAACGGGGAAGTAAAATGGGTGCGAGCTANCGGGCGAGCGGGCGCGGCCAGGATTTTAGGGGCATTAACAACCTTAATTTAGCTTAACGGAAAACATTGAAGCAATTGAAAACTATGGAAAAGCATAAGCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1816#0 CCGCGAGCAGTGGACCGACGGCGCTCGGCAGTGGGTTCGGTGGACCGGCGGCGGGTGGTT 60 consensus_1816#1 ---------------------------------------GCAGAATNGCCCCGAG-GNTT 20 * ** ** ** * * ** consensus_1816#0 TCGGTGGATTCCAGCAGGCCGGCAGCACGTTCCCGCCCGCCAACGGGGCCGGTATGATGC 120 consensus_1816#1 AAAGCGTCCCTCCGCAG--CAGCAGCA-GCAGCAGC--AGCAGCAAGCGCAAGACAA-GC 74 * * * **** * ****** * * ** ** * * * * * ** consensus_1816#0 CGGCGAACGCGTTCGGTGCGTTCCAAACGTTCCCGACCGGTGCCGGACCACAACCGCCGC 180 consensus_1816#1 TAAGCAATCAGTTCGGCACGAT--GAATCTGCGGGACGTGTGGCA-ATAAGTGGAGAACC 131 ** ****** ** * ** * * *** *** * * * * * consensus_1816#0 CCGGACAGTACGCGATGATGGGTGCGGGCGTACCGCCGCAGATGGTGTTCCACAGCA-AC 239 consensus_1816#1 GTGGACCTTA-GCAATCCC--CTCGGGGCCGACTAACTTATCTAGAGCCTCCAAACACAC 188 **** ** ** ** * **** ** * * * * * * * ** ** consensus_1816#0 AATGGTGCGATGGGCGGTGCTCCAGGTGGCATGATGGCACAGCAGGGCGCGATGTTTAAC 299 consensus_1816#1 GCGCGCGCGCAGCCCCTATTCCCCGTCCGAAAGCCAAAAGCAGTGGAAAAAACGATTAAA 248 * *** * * ** * * * * * ** * * **** consensus_1816#0 GCACAGCAGGTTGGCGTTCCGCCGATGGTTCCAGCGTACGGTGCGATGGCGGGCCAGTAC 359 consensus_1816#1 AAAC--CAGTTTACAGTACCGAAACCG--TTAAGCGTTGTGTACTAAAGCCGGGTAGGGG 304 ** *** ** ** *** * * ***** ** * * ** ** ** consensus_1816#0 GGTGCTGCCAGTGGTTTCCCGCCCATGATGGGTATGCAGCCCCCCCAGCCAGGGCAGGTA 419 consensus_1816#1 AAGGAACCTAAAAA---CACTATCACAACAGGAAGCAGGAACGGGGAAGTAAAATGGGTG 361 * * * * * ** * ** * * * * * *** consensus_1816#0 ATGGGCCCGGGAGGAGGCGGAGTGGCTGCGTTTGCTAACTTTCCTAAAGCCGTCCCTCCG 479 consensus_1816#1 CGAGCTANCGGGCGAGCGGGCGCGGCCAGGATTTTAGGGGCATTAACAACCTTAATTTAG 421 * ** *** ** * *** * ** * * ** * * * consensus_1816#0 C--AGCAGCAGCAGCAGCAGCAGCAGCAAGCGCAAGACAAGC-TAAGCAATCAGTTCGGC 536 consensus_1816#1 CTTAACGGAAAACATTGAAGCAATTGAAAACTATGGAAAAGCATAAGCAGA--------- 472 * * * * * * **** * ** * ** **** ****** consensus_1816#0 ACGATGAATCTGCGGGACGTGTGGCAATAAGTGGAGAACCGTGGA 581 consensus_1816#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||