cluster # 1822

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Anopheles gambiae
cluster # 1822 cluster # 1822 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1822#0 length = 628 sequences # 1

consensus_1822#1 length = 524 sequences # 1

consensusID : consensus_1822#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCGCCTCTTCCACAACCAAATCAGTTGGATTTTCTTGGCTGGGATTTTCTATTTCATTTTCGGAATTCCCTATACAAACGGACACTTCACGTGGATAAATCCTCTGCTCCAACTTCGTTCCAAGAATAGTGCATTTGCGACATGATTATCTACACCAACACCGGAAACCCTTTCGTGTTGAAGCTGCTGATTTGTGCAAATTTGGCGAAAACCAACGTGGAGGTTAAGCATGTTACGCTAAATGATCCCGCCCTCGGTGATATGAAGCATCTCCCTATACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTTGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCGAACACAAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTAAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCGCCCGACGGCACACTGGAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTAC]

[+] EMBL BM656172             [CCGCCTCTTCCACAACCAAATCAGTTGGATTTTCTTGGCTGGGATTTTCTATTTCATTTTCGGAATTCCCTATACAAACGGACACTTCACGTGGATAAATCCTCTGCTCCAACTTCGTTCCAAGAATAGTGCATTTGCGACATGATTATCTACACCAACACCGGAAACCCTTTCGTGTTGAAGCTGCTGATTTGTGCAAATTTGGCGAAAACCAACGTGGAGGTTAAGCATGTTACGCTAAATGATCCCGCCCTCGGTGATATGAAGCATCTCCCTATACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTTGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCGAACACAAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTAAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCGCCCGACGGCACACTGGAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTAC]




>consensus_1822#0
CCGCCTCTTCCACAACCAAATCAGTTGGATTTTCTTGGCTGGGATTTTCTATTTCATTTT
CGGAATTCCCTATACAAACGGACACTTCACGTGGATAAATCCTCTGCTCCAACTTCGTTC
CAAGAATAGTGCATTTGCGACATGATTATCTACACCAACACCGGAAACCCTTTCGTGTTG
AAGCTGCTGATTTGTGCAAATTTGGCGAAAACCAACGTGGAGGTTAAGCATGTTACGCTA
AATGATCCCGCCCTCGGTGATATGAAGCATCTCCCTATACTTCAGCTGAACAGTGGCGTG
CAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAA
GTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTTGCGCCCGCACTGACC
CACAACATGGCCGTTGGTTCGCGGGCCGATCCGAACACAAAGCCCATCCTGAACACGCTG
GTAAAGATGCTGGACGATTGTCTAAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGC
AGCGCCGATGTGGCCGTATGGAGCTTGCTTGCGCCCGACGGCACACTGGAAGGGCGCGGT
CAACATTGACAATGTGCTTCGCTGGTAC

consensusID : consensus_1822#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [CCGCTTCCTCCGAACTCGTGCTTTCATTCGACAATGGTTAACGGCACCTTCTTGTGCAATTTCTTACTCTACACTCTAGATTCCGCCCTGGGTGATATGAAGCATCTTCCCGTACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTAGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCCAACACGAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTGAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCCCCCGACGGCACACTGAAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTACCGTCAGATTACGGCCCTGCCCGAGGTACAGTCGGCCCTGGCCGCACTTCCGCTGAAGGAGC]

[+] EMBL BM604620             [CCGCTTCCTCCGAACTCGTGCTTTCATTCGACAATGGTTAACGGCACCTTCTTGTGCAATTTCTTACTCTACACTCTAGATTCCGCCCTGGGTGATATGAAGCATCTTCCCGTACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTAGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCCAACACGAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTGAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCCCCCGACGGCACACTGAAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTACCGTCAGATTACGGCCCTGCCCGAGGTACAGTCGGCCCTGGCCGCACTTCCGCTGAAGGAGC]




>consensus_1822#1
CCGCTTCCTCCGAACTCGTGCTTTCATTCGACAATGGTTAACGGCACCTTCTTGTGCAAT
TTCTTACTCTACACTCTAGATTCCGCCCTGGGTGATATGAAGCATCTTCCCGTACTTCAG
CTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGT
GACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTA
GCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCCAACACGAAGCCC
ATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTGAGCAATAGTACGTTCTTGACG
GGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCCCCCGACGGCACA
CTGAAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTACCGTCAGATTACGGCCCT
GCCCGAGGTACAGTCGGCCCTGGCCGCACTTCCGCTGAAGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1822#0      CCGCCTCTTCCACAACCAAATCAGTTGGATTTTCTTGGCTGGGATTTTCTATTTCATTTT 60
consensus_1822#1      ------------------------------------------------------------
                                                                                  

consensus_1822#0      CGGAATTCCCTATACAAACGGACACTTCACGTGGATAAATCCTCTGCTCCAACTTCGTTC 120
consensus_1822#1      ------------------------------------------------------------
                                                                                  

consensus_1822#0      CAAGAATAGTGCATTTGCGACATGATTATCTACACCAACACCGGAAACCCTTTCGTGTTG 180
consensus_1822#1      -------------------------------------------CCGCTTCCTCCGAACTC 17
                                                                       * * **   * 

consensus_1822#0      AAGCTGCTGATTTGTGCAAATTTGGCGAAAACCAACGTGGAGGTTAAGCATGTTACGCTA 240
consensus_1822#1      GTGCT-TTCATTCGACAATGGTTAACGGCACCTTCTTGTGCAATTTCTTACTCTACACTC 76
                        ***  * *** *   *   **  **  * *       *   **    *   *** ** 

consensus_1822#0      AATGATCCCGCCCTCGGTGATATGAAGCATCTCCCTATACTTCAGCTGAACAGTGGCGTG 300
consensus_1822#1      TA-GATTCCGCCCTGGGTGATATGAAGCATCTTCCCGTACTTCAGCTGAACAGTGGCGTG 135
                       * *** ******* ***************** **  ***********************

consensus_1822#0      CAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAA 360
consensus_1822#1      CAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAA 195
                      ************************************************************

consensus_1822#0      GTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTTGCGCCCGCACTGACC 420
consensus_1822#1      GTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTAGCGCCCGCACTGACC 255
                      ******************************************** ***************

consensus_1822#0      CACAACATGGCCGTTGGTTCGCGGGCCGATCCGAACACAAAGCCCATCCTGAACACGCTG 480
consensus_1822#1      CACAACATGGCCGTTGGTTCGCGGGCCGATCCCAACACGAAGCCCATCCTGAACACGCTG 315
                      ******************************** ***** *********************

consensus_1822#0      GTAAAGATGCTGGACGATTGTCTAAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGC 540
consensus_1822#1      GTAAAGATGCTGGACGATTGTCTGAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGC 375
                      *********************** ************************************

consensus_1822#0      AGCGCCGATGTGGCCGTATGGAGCTTGCTTGCGCCCGACGGCACACTGGAAGGGCGCGGT 600
consensus_1822#1      AGCGCCGATGTGGCCGTATGGAGCTTGCTTGCCCCCGACGGCACACTGAAAGGGCGCGGT 435
                      ******************************** *************** ***********

consensus_1822#0      CAACATTGACAATGTGCTTCGCTGGTAC-------------------------------- 628
consensus_1822#1      CAACATTGACAATGTGCTTCGCTGGTACCGTCAGATTACGGCCCTGCCCGAGGTACAGTC 495
                      ****************************                                

consensus_1822#0      -----------------------------
consensus_1822#1      GGCCCTGGCCGCACTTCCGCTGAAGGAGC 524