cluster # 1827

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Anopheles gambiae
cluster # 1827 cluster # 1827 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1827#0 length = 711 sequences # 1

consensus_1827#1 length = 572 sequences # 1

consensusID : consensus_1827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGGTTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGTGCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACCTGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGTCACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG]

[+] EMBL BM604569             [CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGGTTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGTGCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACCTGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGTCACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG]




>consensus_1827#0
CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGG
TTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGT
GCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACC
TGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGT
CACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC
TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG
AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA
GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA
AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG
ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC
AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG
AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG

consensusID : consensus_1827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGACCATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGGGCCACAACATACTGCTTGA]

[+] EMBL BM615080             [CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGACCATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGGGCCACAACATACTGCTTGA]




>consensus_1827#1
CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGAC
CATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTG
GACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAG
GGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTC
AAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTG
CGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGC
ACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTC
ACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCG
TACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCAT
CGGGACATCAAGGGCCACAACATACTGCTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1827#0      CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGG 60
consensus_1827#1      ------------------------------------------------------------
                                                                                  

consensus_1827#0      TTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGT 120
consensus_1827#1      ------------------------------------------------------------
                                                                                  

consensus_1827#0      GCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACC 180
consensus_1827#1      ----------------------------------------CCGCGGACGCGTGGGCTAGC 20
                                                               ** *  **     ** * *

consensus_1827#0      TGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGT 240
consensus_1827#1      -GCATAGCGTGG-ACGTTGAGCGGTTTTTGTGCTAATG--TGACCATTCGCTTGTTGGCT 76
                       * * *    *    *  ***  *      *** ***   * *  *   *** *     *

consensus_1827#0      CACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC 300
consensus_1827#1      TTCTTCGCA---GGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC 133
                        * *****   ************************************************

consensus_1827#0      TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG 360
consensus_1827#1      TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG 193
                      ************************************************************

consensus_1827#0      AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA 420
consensus_1827#1      AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA 253
                      ************************************************************

consensus_1827#0      GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA 480
consensus_1827#1      GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA 313
                      ************************************************************

consensus_1827#0      AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG 540
consensus_1827#1      AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG 373
                      ************************************************************

consensus_1827#0      ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC 600
consensus_1827#1      ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC 433
                      ************************************************************

consensus_1827#0      AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG 660
consensus_1827#1      AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG 493
                      ************************************************************

consensus_1827#0      AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG--------- 711
consensus_1827#1      AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGG 553
                      ***************************************************         

consensus_1827#0      -------------------
consensus_1827#1      GCCACAACATACTGCTTGA 572