These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1605 fasta sequence [GCANCGAGACGCANGCTCGACGTCACCGACGACAGCNCACGNGGCGTCCGCGACAGTGNAGCAGCNCGGTGTCGNGCGCATTTGAGCCCTTTCAAGAAGGGGACCCCCAACGGAAAAATTTCACGGGCGCCCCNCCGGAAGGGGTTTATGAACAAACCGGGAAACTGGCCCCAAATGGGATTGTGNNGCCAAATTTAACTTTGGTCNCCNGACCCGTTTGATAAATAACGCAACATTCTACNGGTGTTCCGAAAAANACCGGAACGCGTAAAAAAGCAAACCCGGGGTTTAACCCAAGGTATCCCGCTTATTTCCGCAAGTTTTCCANCTTAGGGGGGGCGTTTACTACTCTACTCGGGAGGCATTATTTCCGAAATTTCCCGCAAGCTTAGTCTAGTTCATACTGGAGGAANCGCCCCGCTTTTGGGACCGCNTTANTAACTAAAGTACTATTATGGGTAGAGGCGCCATCCCACTGGAGNGGGCAAACTTTTATATNAGGGGGAAACAGTCTTACNTTCNGGGGGTTAAGGCAGTTTANCCACCCGTAGGGNTAACAGGNAGCCCTTTAAAGGGNGGTTTTACCCGAAACATTTAACCCAAAATTTTAACCGTTNATCATGTACTTTGGGGGTTNAGGGACCCCACCCATTATAATTACCCACGGGCGTGCAGCATTATAGGAGGCCGTANAGGGAAAACAGTTACCCGTAAACGCGCAATATAANGCTGCCCTTTTATAGGGGACGCCNNTTAAGGAGACAAANCAACANCGCCCATGGTCGCCCTGGGANCTCCCGCAGGTTTTAAAGGCTAAAGTCACGTCCCCTAGGNATGTCAAAAACTNTATAGGGCTGGGCGTTTATGGGTGCCGCTCCCTTTAACCCTGGGCATTGTGGTTGAAGATAAACGACCTGGGGGTTTTNATGATCAATGGACGCCTGTNGGTGCAANGTACAAGCTAGANACTCTAACGTNCCCTCTGAGGGTGAAAACATTTNAACCCCCGTTTTAACCCGCACGCCGNCAAAAACACACCCCTACAAAAGGGGTGGACCCCACCCCGCAGTATTGGTGAGGCATCGAAAACANGTTTTCCCCCACATTTAGGTGGTGGGTACGGAGGTCCCCCGTGGGCAAAAAAGCTNTTATACANAGTGTGTGAGACGAGGCCGTTATGGGGGGTGTACAAAACTCGTTTATCCCCGCAGGTGCGCTTTGGTGGTNGGCTTTTTACAAGCCCCCGGAAGCCATTTTTGGGCGATCGCCCCCATTACAATACGTAGTCATCCCTAANATACCCCGTAGTGCGTAAAACTAGAAACGCAANGACTATTATCCCCGCATTTTGGGGACGGGAGCGAAACGGAGCACGACCGCTAGCCACGAGAAAAAAACGTGACTATTCCCCGCNAAAGACGATTTTTCCCGAAGATTAATGATTCTCCCCNCAAGGAACGTCATGCTAGGTGGGGGTACAACAGTACCCCGGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGCCTCCCCTTATKNVKTG] [+] EMBL AL934423 [GCANCGAGACGCANGCTCGACGTCACCGACGACAGCNCACGNGGCGTCCGCGACAGTGNAGCAGCNCGGTGTCGNGCGCATTTGAGCCCTTTCAAGAAGGGGACCCCCAACGGAAAAATTTCACGGGCGCCCCNCCGGAAGGGGTTTATGAACAAACCGGGAAACTGGCCCCAAATGGGATTGTGNNGCCAAATTTAACTTTGGTCNCCNGACCCGTTTGATAAATAACGCAACATTCTACNGGTGTTCCGAAAAANACCGGAACGCGTAAAAAAGCAAACCCGGGGTTTAACCCAAGGTATCCCGCTTATTTCCGCAAGTTTTCCANCTTAGGGGGGGCGTTTACTACTCTACTCGGGAGGCATTATTTCCGAAATTTCCCGCAAGCTTAGTCTAGTTCATACTGGAGGAANCGCCCCGCTTTTGGGACCGCNTTANTAACTAAAGTACTATTATGGGTAGAGGCGCCATCCCACTGGAGNGGGCAAACTTTTATATNAGGGGGAAACAGTCTTACNTTCNGGGGGTTAAGGCAGTTTANCCACCCGTAGGGNTAACAGGNAGCCCTTTAAAGGGNGGTTTTACCCGAAACATTTAACCCAAAATTTTAACCGTTNATCATGTACTTTGGGGGTTNAGGGACCCCACCCATTATAATTACCCACGGGCGTGCAGCATTATAGGAGGCCGTANAGGGAAAACAGTTACCCGTAAACGCGCAATATAANGCTGCCCTTTTATAGGGGACGCCNNTTAAGGAGACAAANCAACANCGCCCATGGTCGCCCTGGGANCTCCCGCAGGTTTTAAAGGCTAAAGTCACGTCCCCTAGGNATGTCAAAAACTNTATAGGGCTGGGCGTTTATGGGTGCCGCTCCCTTTAACCCTGGGCATTGTGGTTGAAGATAAACGACCTGGGGGTTTTNATGATCAATGGACGCCTGTNGGTGCAANGTACAAGCTAGANACTCTAACGTNCCCTCTGAGGGTGAAAACATTTNAACCCCCGTTTTAACCCGCACGCCGNCAAAAACACACCCCTACAAAAGGGGTGGACCCCACCCCGCAGTATTGGTGAGGCATCGAAAACANGTTTTCCCCCACATTTAGGTGGTGGGTACGGAGGTCCCCCGTGGGCAAAAAAGCTNTTATACANAGTGTGTGAGACGAGGCCGTTATGGGGGGTGTACAAAACTCGTTTATCCCCGCAGGTGCGCTTTGGTGGTNGGCTTTTTACAAGCCCCCGGAAGCCATTTTTGGGCGATCGCCCCCATTACAATACGTAGTCATCCCTAANATACCCCGTAGTGCGTAAAACTAGAAACGCAANGACTATTATCCCCGCATTTTGGGGACGGGAGCGAAACGGAGCACGACCGCTAGCCACGAGAAAAAAACGTGACTATTCCCCGCNAAAGACGATTTTTCCCGAAGATTAATGATTCTCCCCNCAAGGAACGTCATGCTAGGTGGGGGTACAACAGTACCCCGGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGCCTCCCCTTATKNVKTG] consensusID : consensus_1828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence [CCGATTGGGTAGGNNGGTAGTCAGGAGNATGGAAAAAAATAACACCCTGATGTAGTGGTGTAGACTGCTGATCTGCGCNCGCCCGAGAGTATTTTGTGTGTAGTGCGTCCAATGTGGTAGGATCGCCCCGCTAAAGAAGTGGNGTACCTCCCNGTGGTGGGGTGGGTCCCCCTAAAAAACAAAGAATGTCCTGTTGTGGGTGGAGTAATTATTATGCCGATCGCTAGACTCACAGAACTCNCCGTGGTAGTGGTGGCAGTATTTACCACTATGGTTGNATGAGTTGGTGAGGAGTACTGATTAGTCCCNCAATAAAATAGTACCGTGCCCCCGTGTGGGTGAGTGGTGTAGANGGGGAGTGGTGGNNGCGCATATTGTGGGTGAGTCGCCCCANTATATTGTGNGAGGGGCCGCACAGCATGAAGGAGTAGAAAAGATNTCANGTGTGGGTTAAAAGAACGAGCTTGGGGGGCGAAAAAACGCCGCNCCGGCGTAAGATAATGATGTATAAAATGATAGTAGTACANGGCTCCACGGTGTGGTAAACGCTAAANTAGTCCCGCCGAAAAGCTGGTTTATTCGCCATGGGGACATCAGTGGGTCAGCCTTATTTTCTCNCCAGTGGTGAGTAACCTGCNAAAGAAACCCCGAGGTGAGATGGGTNAANGNNGTGGTCGCCCCACAAATACNAAAATAGACGACTATTGTGGGTGGGCGGTAATTTACACTCAGCTACATGTGGTGAGTGGTGAGTGCCCAGCGCGGATTTATAGATATGATACAATAACATATGATGGAGAGTGAGTACCCCGATTAAAATGGTTTGGCAGGGTGTGTGAAAACGCACATAAGCTTGTTTGCCGCAAAAAGTAAAGTGTGAAGNACCAGTAAAGACGTAATATAGCTCCGGTGGATAGTATATGACTAAAAGTGATTTATTGTCGCCGGAAAAAATTTTATGAATTATTAGATCCCCATAAAGAACCACGTGGGGGCGACTTTATTGTGGGAGGCGCTTTAATACTCGGGGTGGTAGGTAGAGTAGACACTNTGGCTGNTATAAAAAGATNAAAACGCCCCTGGTGGGAATGAAAATGACAANAGCACGTAAGTAACGACCTCGAAAAAAAGTAACCGTCACTCCGGGGGGGGNAGACTTTGATAAATTAATAACGCAAGCCCCCTGGGTGTGGTGGGGCGGCCAGCGCTTTATATCCCGCGGGGGTGCCACTTTATGTGTGCGTATAAAAGAAAATACAGCCTCCATGNGTGAGTAGGAGGTACGGATGTATGATAAGATAAAAAGTGGTGATCGCCCCGTAATGANACAGTGGCCTATTGTGGGGATACTCCCATGGACATCGTGCTGACCCATCTTTTGGNGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGC] [+] EMBL AL934422 [CCGATTGGGTAGGNNGGTAGTCAGGAGNATGGAAAAAAATAACACCCTGATGTAGTGGTGTAGACTGCTGATCTGCGCNCGCCCGAGAGTATTTTGTGTGTAGTGCGTCCAATGTGGTAGGATCGCCCCGCTAAAGAAGTGGNGTACCTCCCNGTGGTGGGGTGGGTCCCCCTAAAAAACAAAGAATGTCCTGTTGTGGGTGGAGTAATTATTATGCCGATCGCTAGACTCACAGAACTCNCCGTGGTAGTGGTGGCAGTATTTACCACTATGGTTGNATGAGTTGGTGAGGAGTACTGATTAGTCCCNCAATAAAATAGTACCGTGCCCCCGTGTGGGTGAGTGGTGTAGANGGGGAGTGGTGGNNGCGCATATTGTGGGTGAGTCGCCCCANTATATTGTGNGAGGGGCCGCACAGCATGAAGGAGTAGAAAAGATNTCANGTGTGGGTTAAAAGAACGAGCTTGGGGGGCGAAAAAACGCCGCNCCGGCGTAAGATAATGATGTATAAAATGATAGTAGTACANGGCTCCACGGTGTGGTAAACGCTAAANTAGTCCCGCCGAAAAGCTGGTTTATTCGCCATGGGGACATCAGTGGGTCAGCCTTATTTTCTCNCCAGTGGTGAGTAACCTGCNAAAGAAACCCCGAGGTGAGATGGGTNAANGNNGTGGTCGCCCCACAAATACNAAAATAGACGACTATTGTGGGTGGGCGGTAATTTACACTCAGCTACATGTGGTGAGTGGTGAGTGCCCAGCGCGGATTTATAGATATGATACAATAACATATGATGGAGAGTGAGTACCCCGATTAAAATGGTTTGGCAGGGTGTGTGAAAACGCACATAAGCTTGTTTGCCGCAAAAAGTAAAGTGTGAAGNACCAGTAAAGACGTAATATAGCTCCGGTGGATAGTATATGACTAAAAGTGATTTATTGTCGCCGGAAAAAATTTTATGAATTATTAGATCCCCATAAAGAACCACGTGGGGGCGACTTTATTGTGGGAGGCGCTTTAATACTCGGGGTGGTAGGTAGAGTAGACACTNTGGCTGNTATAAAAAGATNAAAACGCCCCTGGTGGGAATGAAAATGACAANAGCACGTAAGTAACGACCTCGAAAAAAAGTAACCGTCACTCCGGGGGGGGNAGACTTTGATAAATTAATAACGCAAGCCCCCTGGGTGTGGTGGGGCGGCCAGCGCTTTATATCCCGCGGGGGTGCCACTTTATGTGTGCGTATAAAAGAAAATACAGCCTCCATGNGTGAGTAGGAGGTACGGATGTATGATAAGATAAAAAGTGGTGATCGCCCCGTAATGANACAGTGGCCTATTGTGGGGATACTCCCATGGACATCGTGCTGACCCATCTTTTGGNGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCTAGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1828#0 GCANCGAGACGCANGCTCGACGTCACCGACGACAGCNCACGNGGCGTCCGCGACAGTGNA 60 consensus_1828#1 -------------------CCGATTGGGTAGGNNGGTAGTCAGGAGNATGGAAAAAAATA 41 ** * * * ** * * * * * consensus_1828#0 GCAGCNCGGTGTCGNGCGCATTTGAGCCCTTTCAAGAAGGGGACCCCCAACGGAAAAATT 120 consensus_1828#1 ACACCCTGATGTAGTG-----GTGTAGACTGCTGATCTGCGCNCGCCC---GAGAGTATT 93 ** * * *** * * ** ** * * * * *** * * *** consensus_1828#0 TCACGGGCGCCCCNCCGGAAGGGGTTTATGAACAAACCGGGAAACTGGCCCCAAATGGGA 180 consensus_1828#1 TTGTGTGTAGTGCGTCCAATGTGG--TAGGATCGCCCCGCTAAAG-------AAGTGG-- 142 * * * * * * * ** ** ** * *** *** ** *** consensus_1828#0 TTGTGNNGCCAAATTTAACTTTGGTCNCCNGACCCGTTTGATAAATAACGCAACATTCTA 240 consensus_1828#1 -NGTACCTCCCNGT---GGTGGGGTGGGTCCCCCTAAAAAACAAAGAATGT--CCTGTTG 196 ** ** * * *** ** * *** ** * * * * consensus_1828#0 CNGGTGTTCCGAAAAANAC-CGGAACGCGTAAAAAAGCAAACCCGGGGTTTAACCCAAGG 299 consensus_1828#1 TGGGTGGAGTAATTATTATGCCGATCGCTAGACTCACAGAACTCNCCGTGGTAGTGGTGG 256 **** * * * * ** *** * * *** * ** * ** consensus_1828#0 TATCCCGCTTATTTCCGCAAGTTTTCCANCTTAGGGGGGGCGTTTACTACTCTACTCGGG 359 consensus_1828#1 CAGT--ATTTACCACTATGGTTGNATGAGTTGGTGAGGAGTACTGATTAGT---CCCNCA 311 * *** * * * * * ** * * * ** * * * consensus_1828#0 AGGCATTATTTCCGAAATTTCCCGCAAGCTTAGTCTAGTTCATACTGGAGGAANCGCCCC 419 consensus_1828#1 ATAAAATAGTACCGTGCCCCCGTGTGGG-TGAGTGGTGTAGANGG-GGAGTGGTGGNNGC 369 * * ** * *** * * * * *** ** * **** * * consensus_1828#0 GCTTTTGGGACCGCNTTANTAACTAAAGTACTATTATGGGTAGAGGCGC-CATCCCACTG 478 consensus_1828#1 GCATATTG---TGGGTGAGTCGCCCCANTA-TATTGTGNGAGGGGCCGCACAGCATGAAG 425 ** * * * * * * * * * ** **** ** * * * *** ** * * consensus_1828#0 GAGNGGGCAAACTTTTATATNAGGGGGAAACAGTCTTACNTTCNGGGGGTTAAGGCAGTT 538 consensus_1828#1 GAGTAGAAAAGATNTCANGTGTGGGTTAAAAGAACGAGCTT--GGGGGGCGAAAAAACGC 483 *** * ** * * * * *** *** * * * ***** ** * consensus_1828#0 TANCCACCCGTAGGGNTAACAGGNAGCCCTTTAAAGGGNGGTTTTACCCGAAACATTTAA 598 consensus_1828#1 CGCNCCGGCGTAAGATAATGATGTA-----TAAAATGATAGTAGTACANGGCTC------ 532 * **** * * * * * * *** * ** *** * * consensus_1828#0 CCCAAAATTTTAACCGTTNATCATGTACTTTGGGGGTTNAGGGACCCCACCCATTATAAT 658 consensus_1828#1 CACGGTGTGGTAAACGCTAAA---NTAGTCCCGCCGAAAAGCTGGTTTATTCGCCATGGG 589 * * * *** ** * * ** * * * ** * * ** consensus_1828#0 TACCCACGGGCGTGCAGCATTATAGGAGGCCGTANAGGGAAAACAGTTACCCGTAAACGC 718 consensus_1828#1 GACATCAGTGGGT-CAGCCTTATTTTCTCNCCAGTGGTGAGTA-ACCTGCNAAAGAAACC 647 ** * * ** **** **** * * ** * * * * ** * consensus_1828#0 GCAATATAANGCTGCCCTTTTATAGGGGACGCCNNTTAAGGAGACAAANCAACANCGCCC 778 consensus_1828#1 CCGAGGTGAGA-TGGGTNAANGNNGTGGTCGCCCCACAAATACNAAAATAGACGACTATT 706 * * * * ** * ** **** ** * *** ** * consensus_1828#0 ATGGTCGCCCTGGGANCTCC-CGCAGGTTTTAAAGGCTAAAGTCACGTCCCCTAGGNATG 837 consensus_1828#1 GTGGGTGGGCGGTAATTTACACTCAGCTACATGTGGTGAGTGGTGAGTGCCCAGCGCGGA 766 *** * * * * * * * *** * ** * * ** *** * consensus_1828#0 TC---AAAAACTNTATAGGGCTGGGCGTTTATGGGTGC-CGCTCCCTTTAACCCTGGGCA 893 consensus_1828#1 TTTATAGATATGATACAATAACATATGATGGAGAGTGAGTACCCCGATTAAAATGGTTTG 826 * * * * ** * * * * *** * ** **** * consensus_1828#0 TTGTGGTTGAAGATAAACGACCTGGGGGTTTTNATGATCAATGGACGCCTGTNGGTGCAA 953 consensus_1828#1 GCAGGGTGTGTGAAAACGCACATAAGCTTGTTTGCCGCAAAAAGTA------AAGTGTGA 880 *** ** ** ** * * * ** ** * *** * consensus_1828#0 NGTACAAGCTAGANACTCTAACGTNCCCTCTGAGGGTGAAAACATTTNAACCCCCGTTTT 1013 consensus_1828#1 AGNACCAG-TAAAGACG-TAATATAGCTCCGGTGGAT-AGTATATGACTAAAAGTGATTT 937 * ** ** ** * ** *** * * * * ** * * * ** * * *** consensus_1828#0 AACCCGCACGCCGNCAAAAACACACCCCTACAAAAGGGGTGGACCCCACCCCGCAGTA-- 1071 consensus_1828#1 ATTGT---CGCCGGAAAAAAT-----TTTATGAATTATTAGATCCCCATAAAGAACCACG 989 * ***** ***** ** ** * ***** * * * consensus_1828#0 TTGGTGAGGCATCGAAAACANGTTTTCCCCCACATTTAGG-TGGTGGGTACGG-AGGTCC 1129 consensus_1828#1 TGGGGGCGACTTTATTGTGGGAGGCGCTTTAATACTCGGGGTGGTAGGTAGAGTAGACAC 1049 * ** * * * * * * * * ** **** **** * ** * consensus_1828#0 CCCG--TGG-GCAAAAAAGCTNTTATACANAGTGTGTGAGACGAGGCCGTTATGGGGGGT 1186 consensus_1828#1 TNTGGCTGNTATAAAAAGATNAAAACGCCCCTGGTGGGAATGAAAATGACAANAGCACGT 1109 * ** ***** * * *** ** * * * ** consensus_1828#0 GTACAAAACTCGTTTATCCCCGCAGGTGCGCTTTGGTGGTNGGCTTTTTACAAGCCCCCG 1246 consensus_1828#1 AAGTAACGACCTCGAAAAAAAGTAACCGTCACTCCGGGGGGGGN-------AGACTTTGA 1162 ** * * * * * * * ** ** * * consensus_1828#0 GAAGCCATTTTTGGGCGATCGCCCCCATTACAATACG-TAGTCATCCCTAANATACCCCG 1305 consensus_1828#1 TAAATTAATAACG--CAAGCCCCCTGGGTGTGGTGGGGCGGCCAGCGCTT-TATATCCCG 1219 ** * * * * * * *** * * * * ** * ** *** **** consensus_1828#0 TAGTGCGTAAAACTAGAAACGCAANGACTATTATCCCCGCATTTTGGGGACGGGAGCGAA 1365 consensus_1828#1 CGG-GGGTGCCACTTTATGTGTGCGTATAAAAGAAAATACAGCCTCCATGNGTGAGT--- 1275 * * ** *** * * * * ** * * *** consensus_1828#0 ACGGAGCACGACCGCTAGCCACGAGAAAAAAACGTGACTATTCCCCGCNAAAGACGATTT 1425 consensus_1828#1 AGGAGGTACGGATGTATGATAAGATAAAAA---GTGGTGATCGCCCCGTAATGANACAGT 1332 * * * *** * * * ** ***** *** ** *** ** ** * consensus_1828#0 TTCCCGAAGATTAATGATTCTCCCCNCAAGGAACGTCATGCTAGGTGGGGGTACAACAGT 1485 consensus_1828#1 GGCCTATTG--TGGGGATACTCCC----ATGGACATCGTGCT-------GACCCATC--T 1377 ** * * *** ***** * * ** ** **** * ** * * consensus_1828#0 ACCCCGGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCT 1545 consensus_1828#1 TTTGGNGTGCGGTGGTGCACACAANACAGTGTGGCGGAAAAAGAGCATGTATTAATCCCT 1437 ****************************************************** consensus_1828#0 AGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGCCTCCCCTTATKNVKTG 1605 consensus_1828#1 AGAGGTGNGCAGNATATCTTGGGGAGCGAAAAAAGAGGGGTAGC---------------- 1481 ******************************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||