These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [GAAAAAAAGAAATCCTCTCCTATTCCCATCGCTGTCATCGCCGTAGTCGTACGTAGGCAGAAGGCAAATCCTTTTCTTCCTGCAAATAAGAACCAAACGAGTCAGTAAATGAAAATAAAACGCTAGAACAAACAGACAACAACAAAGATAAGAGAACCAAGCTAAAACACACACACGTACGAGCTCAATCATGTAGAAGGGCGAACACACACACACAGTGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGTACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGTCACAGTTGATCGGCAATTATCAAACGTATTAATAACACGCACAGAGCGAGAGAAAGAGTAATAGTGCAAAGGCCGAACGTTCATAGTAGATAATTAAATGGTTTGGTTAGATTAGCTATTTGCCGTCTAGATGATAATCTTTGAATTGCTCGAAGCGATTGCACCAAAATGGAAACGATCCGGCAGTAGGCGAAGTAGGGGCTCACGCGGCATTGTTCCAGAGAAGCATTTAGCATTTGGTTTTAAGTACCACTTTGTTCCAATCGT] [+] EMBL BX614077 [GAAAAAAAGAAATCCTCTCCTATTCCCATCGCTGTCATCGCCGTAGTCGTACGTAGGCAGAAGGCAAATCCTTTTCTTCCTGCAAATAAGAACCAAACGAGTCAGTAAATGAAAATAAAACGCTAGAACAAACAGACAACAACAAAGATAAGAGAACCAAGCTAAAACACACACACGTACGAGCTCAATCATGTAGAAGGGCGAACACACACACACAGTGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGTACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGTCACAGTTGATCGGCAATTATCAAACGTATTAATAACACGCACAGAGCGAGAGAAAGAGTAATAGTGCAAAGGCCGAACGTTCATAGTAGATAATTAAATGGTTTGGTTAGATTAGCTATTTGCCGTCTAGATGATAATCTTTGAATTGCTCGAAGCGATTGCACCAAAATGGAAACGATCCGGCAGTAGGCGAAGTAGGGGCTCACGCGGCATTGTTCCAGAGAAGCATTTAGCATTTGGTTTTAAGTACCACTTTGTTCCAATCGT] consensusID : consensus_1829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [TCGCCCCGGTTTAAAACACACACACACGTACGAGCTCAATCATGTAGAATGGGCGAACACACACACACACAGGGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGCACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGACACAGTTGGTCAGCAATTAACAAACGTATTAATAACACGCACAGAACGAGGGATAAGAGTAATAGTGCAATGGCCGAACGAGCATAGTAGATAATTAAATGGTTTTGTTAGATTAGCTATTTGGCTAAATGATAATCTTTGAATTGCTCGAAGCGATTGCACCCAAAATGGAAACGATCCGGCAGTCAGCAGCAAGTAGGGGCTAATGNCGGGACTGGTCCCAGGAAGAAGCCACTTTAGCCATTTGGGTTTAAGTACNCAATTATGGTTCCAATCGGTTTTGGANCGTGCCGTTANCAACCTTGGCGCCTTGGTGGGTTCTTGTGTGTAGTGATGAAGTGCAGTCTGATGAAATGTCTGCTCTCTCT] [+] EMBL AL694287 [TCGCCCCGGTTTAAAACACACACACACGTACGAGCTCAATCATGTAGAATGGGCGAACACACACACACACAGGGCTAGCTTGTAGGGAAAAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTAAGTGCGCACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGACACAGTTGGTCAGCAATTAACAAACGTATTAATAACACGCACAGAACGAGGGATAAGAGTAATAGTGCAATGGCCGAACGAGCATAGTAGATAATTAAATGGTTTTGTTAGATTAGCTATTTGGCTAAATGATAATCTTTGAATTGCTCGAAGCGATTGCACCCAAAATGGAAACGATCCGGCAGTCAGCAGCAAGTAGGGGCTAATGNCGGGACTGGTCCCAGGAAGAAGCCACTTTAGCCATTTGGGTTTAAGTACNCAATTATGGTTCCAATCGGTTTTGGANCGTGCCGTTANCAACCTTGGCGCCTTGGTGGGTTCTTGTGTGTAGTGATGAAGTGCAGTCTGATGAAATGTCTGCTCTCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1829#0 GAAAAAAAGAAATCCTCTCCTATTCCCATCGCTGTCATCGCCGTAGTCGTACGTAGGCAG 60 consensus_1829#1 ------------------------------------------------------------ consensus_1829#0 AAGGCAAATCCTTTTCTTCCTGCAAATAAGAACCAAACGAGTCAGTAAATGAAAATAAAA 120 consensus_1829#1 ------------------------------------------------------------ consensus_1829#0 CGCTAGAACAAACAGACAACAACAAAGATAAGAGAACCAAGCTAAAACACACACAC--GT 178 consensus_1829#1 -------------------------------TCGCCCCGGTTTAAAACACACACACACGT 29 * ** ************** ** consensus_1829#0 ACGAGCTCAATCATGTAGAA-GGGCGAACACACACACACA--GTGCTAGCTTGTAGGGAA 235 consensus_1829#1 ACGAGCTCAATCATGTAGAATGGGCGAACACACACACACACAGGGCTAGCTTGTAGGGAA 89 ******************** ******************* * **************** consensus_1829#0 AAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTA 295 consensus_1829#1 AAGGGGTGTTTCGATAGCTAAAGTTGAGAGTTAATTCTTAATTATTAAAGTTATCGTTTA 149 ************************************************************ consensus_1829#0 AGTGCGTACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGTCACAGTTGATCGG 355 consensus_1829#1 AGTGCGCACGTGTGCATAAGTTTCGTTTAATGTCAATCAATGCCGGACACAGTTGGTCAG 209 ****** *************************************** ******** ** * consensus_1829#0 CAATTATCAAACGTATTAATAACACGCACAGAGCGAGAGA-AAGAGTAATAGTGCAAAGG 414 consensus_1829#1 CAATTAACAAACGTATTAATAACACGCACAGAACGAGGGATAAGAGTAATAGTGCAATGG 269 ****** ************************* **** ** **************** ** consensus_1829#0 CCGAACGTTCATAGTAGATAATTAAATGGTTTGGTTAGATTAGCTATTTGCCGTCTAGAT 474 consensus_1829#1 CCGAACGAGCATAGTAGATAATTAAATGGTTTTGTTAGATTAGCTATTTGGC---TAAAT 326 ******* *********************** ***************** * ** ** consensus_1829#0 GATAATCTTTGAATTGCTCGAAGCGATTGCACC-AAAATGGAAACGATCCGGCAGTAGGC 533 consensus_1829#1 GATAATCTTTGAATTGCTCGAAGCGATTGCACCCAAAATGGAAACGATCCGGCAGTCAGC 386 ********************************* ********************** ** consensus_1829#0 G--AAGTAGGGGCTCACGC-GGCATTGTTCCAGAGAAGCA-----TTTAGC-ATTTGGTT 584 consensus_1829#1 AGCAAGTAGGGGCTAATGNCGGGACTGGTCCCAGGAAGAAGCCACTTTAGCCATTTGGGT 446 *********** * * ** * ** *** **** * ****** ****** * consensus_1829#0 TTAAGTACCACTTT---GTTCCAATCGT-------------------------------- 609 consensus_1829#1 TTAAGTACNCAATTATGGTTCCAATCGGTTTTGGANCGTGCCGTTANCAACCTTGGCGCC 506 ******** ** ********** consensus_1829#0 ---------------------------------------------------------- consensus_1829#1 TTGGTGGGTTCTTGTGTGTAGTGATGAAGTGCAGTCTGATGAAATGTCTGCTCTCTCT 564 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||