These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCNGGNTTATTGTCACATACAACACAAAACAAGCACATAGCCGATTGAAGTGTTTTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCGTCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATNTCGCGCCCACAAGCCGCTGCTCGCCGCTGTAGTGCCTACTTCAAGGAGCTGTTCGATGCAAGTTCCTTTACAGCACAATCACATGATAATATGCTCAAACATTTCGCACGANGTCATGATGTCGCTGGTACAGTTTATGTACTTGGGCGAAGTCGANAGTGNCCCANGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCCATCTGGGGACTGAGCATACGACCCGTCGGACCAAACCGGCGGCGACTGCGAGCATCCAGCAGACAGCATCTCAATGCGTANGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCATCCGAATCTTGGTTGAAGGGTGTNATCGCGTAAATACAAAACGCCTATCTGGGCGACTAAATAACGGGCACGCACACTAACCGAATCGGCGTCTATCAACGATTCACACTAG] [+] EMBL AL694293 [CCNGGNTTATTGTCACATACAACACAAAACAAGCACATAGCCGATTGAAGTGTTTTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCGTCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATNTCGCGCCCACAAGCCGCTGCTCGCCGCTGTAGTGCCTACTTCAAGGAGCTGTTCGATGCAAGTTCCTTTACAGCACAATCACATGATAATATGCTCAAACATTTCGCACGANGTCATGATGTCGCTGGTACAGTTTATGTACTTGGGCGAAGTCGANAGTGNCCCANGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCCATCTGGGGACTGAGCATACGACCCGTCGGACCAAACCGGCGGCGACTGCGAGCATCCAGCAGACAGCATCTCAATGCGTANGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCATCCGAATCTTGGTTGAAGGGTGTNATCGCGTAAATACAAAACGCCTATCTGGGCGACTAAATAACGGGCACGCACACTAACCGAATCGGCGTCTATCAACGATTCACACTAG] consensusID : consensus_1830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGATCCAAAACAACACAAGCACAAAGCCGATAAAAAGTTATTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCATCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATTCGCGCCCACAAGCTGCTGCTCGCCGCCTGTAGTGCCTACTTCAAGGAGCTGTTCGAGCTAGTTCCTTTGCAGCACAATCACATGATAATATGCTCAAACATTTCGCACGATGTCATGATGTCGCTGGTACAGTTTATGTACCTGGGCGAGGTGAACGTGCCCCAGGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCATCTGGGGACTGACATACGACCCGTCGGACCAGCCGGCGGCGACTGCGAGCGTCCAGCAGACATCTCAATGCGTTGCGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCTCCGAATCTTGTTGAGGCTGTACCGCTAATACAAACGCCTTTGGATACTAATATCGCCACGCAAATAACCGAATCGCGTCTATCAACTGTTTCAACTAGC] [+] EMBL BM600951 [CCGATCCAAAACAACACAAGCACAAAGCCGATAAAAAGTTATTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCATCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATTCGCGCCCACAAGCTGCTGCTCGCCGCCTGTAGTGCCTACTTCAAGGAGCTGTTCGAGCTAGTTCCTTTGCAGCACAATCACATGATAATATGCTCAAACATTTCGCACGATGTCATGATGTCGCTGGTACAGTTTATGTACCTGGGCGAGGTGAACGTGCCCCAGGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCATCTGGGGACTGACATACGACCCGTCGGACCAGCCGGCGGCGACTGCGAGCGTCCAGCAGACATCTCAATGCGTTGCGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCTCCGAATCTTGTTGAGGCTGTACCGCTAATACAAACGCCTTTGGATACTAATATCGCCACGCAAATAACCGAATCGCGTCTATCAACTGTTTCAACTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1830#0 CCNGGNTTATTGTCACATACAACACAAAACAAGCACATAGCCGATTGAAGTGTTTTTTTT 60 consensus_1830#1 -------------CCGATCCAAAACAACACAAGCACAAAGCCGATAAAAAGTTATTTTTT 47 * ** *** **** ********* ******* ** * ****** consensus_1830#0 GCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTAC 120 consensus_1830#1 GCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTAC 107 ************************************************************ consensus_1830#0 AAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCGTCAACAAGATAACAAGATGCTGGAT 180 consensus_1830#1 AAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCATCAACAAGATAACAAGATGCTGGAT 167 ********************************** ************************* consensus_1830#0 ATAACGCTGTTTTGTGAGGGGCGCAAGATNTCGCGCCCACAAGCCGCTGCTCGCCGC-TG 239 consensus_1830#1 ATAACGCTGTTTTGTGAGGGGCGCAAGATT-CGCGCCCACAAGCTGCTGCTCGCCGCCTG 226 ***************************** ************* ************ ** consensus_1830#0 TAGTGCCTACTTCAAGGAGCTGTTCGATGCAAGTTCCTTTACAGCACAATCACATGATAA 299 consensus_1830#1 TAGTGCCTACTTCAAGGAGCTGTTCGA-GCTAGTTCCTTTGCAGCACAATCACATGATAA 285 *************************** ** ********* ******************* consensus_1830#0 TATGCTCAAACATTTCGCACGANGTCATGATGTCGCTGGTACAGTTTATGTACTTGGGCG 359 consensus_1830#1 TATGCTCAAACATTTCGCACGATGTCATGATGTCGCTGGTACAGTTTATGTACCTGGGCG 345 ********************** ****************************** ****** consensus_1830#0 AAGTCGANAGTGNCCCANGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCC 419 consensus_1830#1 AGGT-GAACGTGCCCCAGGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCC 404 * ** ** *** **** ****************************************** consensus_1830#0 CATCTGGGGACTGAGCATACGACCCGTCGGACCAAACCGGCGGCGACTGCGAGCATCCAG 479 consensus_1830#1 -ATCTGGGGACTGA-CATACGACCCGTCGGACCAG-CCGGCGGCGACTGCGAGCGTCCAG 461 ************* ******************* ****************** ***** consensus_1830#0 CAGACAGCATCTCAATGCGT-ANGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTC 538 consensus_1830#1 CAGA---CATCTCAATGCGTTGCGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTC 518 **** ************* ************************************* consensus_1830#0 GAACCATCCGAATCTTGGTTGAAGGGTGTNATCGCGTAAATACAAAACGCCTATCTGGGC 598 consensus_1830#1 GAACC-TCCGAATCTTG--TTGAGGCTGTA---CCGCTAATACAAA-CGCCT---TTGGA 568 ***** *********** * *** *** ** ******** ***** * ** consensus_1830#0 GACTAAATAACGGGCACGCACACTAACCGAATCGGCGTCTATCAACGATTCACACTAG- 656 consensus_1830#1 TACTAA--TATCGCCACGCAAA-TAACCGAATCG-CGTCTATCAACTGTTTCAACTAGC 623 ***** * * ****** * *********** *********** ** ***** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||