These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGTTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGTCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTTGTTTTTTTGTTTTATTTAGTTTTCTTCCTACCCCCCCCTGCATTATTATGGCGTGTGTGTGCTGAATGTAAAAGAAGTTTGGGTGGAAACAGAAAGAAAGAAGGAAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTTATTTAGGAAAGGCTGGGAAGGCGTTTGTTTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGAGTGGGGAAATAGGGTGGTGTACCGACAGCGACGGTAAAAAATGGAAAAGTGATTGGAAAGTAAGGGAAAAGTGAACGCGTGAAAGTTGGTTTAGAAGAGTAAAAAAAAGTGGGAGGAAAAGTCAAACTAAACACAGTGTAGAGCAAAAGGATAAGCAAAGAAAGAAGAAAACACACACACACATATACACGAAATGG] [+] EMBL BM628466 [CCGTTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGTCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTTGTTTTTTTGTTTTATTTAGTTTTCTTCCTACCCCCCCCTGCATTATTATGGCGTGTGTGTGCTGAATGTAAAAGAAGTTTGGGTGGAAACAGAAAGAAAGAAGGAAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTTATTTAGGAAAGGCTGGGAAGGCGTTTGTTTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGAGTGGGGAAATAGGGTGGTGTACCGACAGCGACGGTAAAAAATGGAAAAGTGATTGGAAAGTAAGGGAAAAGTGAACGCGTGAAAGTTGGTTTAGAAGAGTAAAAAAAAGTGGGAGGAAAAGTCAAACTAAACACAGTGTAGAGCAAAAGGATAAGCAAAGAAAGAAGAAAACACACACACACATATACACGAAATGG] consensusID : consensus_1832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [AATCGCCGAGGNCACTTTCTCGTGTATTATATTCTGTTTCTATTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGCCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTCTGTNCTTTTATTAGTTTTATTTAGTTTTCTTCCTACCCCCCGCATTATTACCGTGTGATGCGTGTGTGTGTGTGTGCTGAATGTAAAACAAGTTTGAGTGGAAACAGAAAGAAAGGAAGTAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTCTATTTCAGGCAANAGGCTGGGAAGGCGTTTGTTCTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGACGGGGGAAATAGGGTGGTGTACCGACAGCGACGGTNAAAACACATGG] [+] EMBL AL933170 [AATCGCCGAGGNCACTTTCTCGTGTATTATATTCTGTTTCTATTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGCCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTCTGTNCTTTTATTAGTTTTATTTAGTTTTCTTCCTACCCCCCGCATTATTACCGTGTGATGCGTGTGTGTGTGTGTGCTGAATGTAAAACAAGTTTGAGTGGAAACAGAAAGAAAGGAAGTAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTCTATTTCAGGCAANAGGCTGGGAAGGCGTTTGTTCTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGACGGGGGAAATAGGGTGGTGTACCGACAGCGACGGTNAAAACACATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1832#0 ---------------------------------------CCGTTTTGTACTGTAACTAGA 21 consensus_1832#1 AATCGCCGAGGNCACTTTCTCGTGTATTATATTCTGTTTCTATTTTGTACTGTAACTAGA 60 * ****************** consensus_1832#0 GCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAA 81 consensus_1832#1 GCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAA 120 ************************************************************ consensus_1832#0 GCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGTCTGCGTGC 141 consensus_1832#1 GCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGCCTGCGTGC 180 *************************************************** ******** consensus_1832#0 GTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCT-TGTTTTTTT----GTTTTA 196 consensus_1832#1 GTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTCTGTNCTTTTATTAGTTTTA 240 **************************************** *** **** ****** consensus_1832#0 TTTAGTTTTCTTCCTACCCCCCCCTGCATTATTATG----------GCGTGTGTGTGCTG 246 consensus_1832#1 TTTAGTTTTCTTCCTACCCCCCGCATTATTACCGTGTGATGCGTGTGTGTGTGTGTGCTG 300 ********************** * **** ** * ************ consensus_1832#0 AATGTAAAAGAAGTTTGGGTGGAAACAGAAAGAAAGAAGGAAAGAATGTGGCGCATCCTA 306 consensus_1832#1 AATGTAAAACAAGTTTGAGTGGAAACAGAAAGAAAGGAAGTAAGAATGTGGCGCATCCTA 360 ********* ******* ****************** * * ******************* consensus_1832#0 GACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTT-TAT 365 consensus_1832#1 GACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTCTAT 420 ******************************************************** *** consensus_1832#0 TTAGG---AAAGGCTGGGAAGGCGTTTGTT-TAATTGCTAAGCTTTAGATCATAGAGGGG 421 consensus_1832#1 TTCAGGCAANAGGCTGGGAAGGCGTTTGTTCTAATTGCTAAGCTTTAGATCATAGAGGGG 480 ** * * ******************** ***************************** consensus_1832#0 GATGTGAGTGGGGAAATAGGGTGGTGTACCGACAGCGACGGTAAAAAATGGAAAAGTGAT 481 consensus_1832#1 GATGTGACGGGGGAAATAGGGTGGTGTACCGACAGCGACGGTNAAAACACATGG------ 534 ******* ********************************* **** consensus_1832#0 TGGAAAGTAAGGGAAAAGTGAACGCGTGAAAGTTGGTTTAGAAGAGTAAAAAAAAGTGGG 541 consensus_1832#1 ------------------------------------------------------------ consensus_1832#0 AGGAAAAGTCAAACTAAACACAGTGTAGAGCAAAAGGATAAGCAAAGAAAGAAGAAAACA 601 consensus_1832#1 ------------------------------------------------------------ consensus_1832#0 CACACACACATATACACGAAATGG 625 consensus_1832#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||