These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [AGCAGAATCGGCACGAGGANANTGAAATGAACAATCTCGGCGACATACGCAAGCTGGCGGAGCGGGCGTGCAATCTCTACCAGCAGCACGGTTCGCCCGAATCGGGCGCCACCGTGCTGGACAAGGCGGCAAAGATACTGGAGCAGACGCACCCGGAAGACGCGCTGCAGCTGTACAAGCAGGCCGTCGACGTGGTTACGATCGAAGACTCAACGCGCCAGGGCGCCGAATACGCTAGCAAGGTGGCTCGCATCATGGTGAAGCTCGGCATGTACGATCAGGCGGCAGACGCTATACGGCGCGAAATCGGGCTGCACCAGCAGGTCGGTTCGGAGGGTGCCATCGGCCGGCTAGCGGTGGCACTGGTGCTGGTGCAGCTCGCCCGTGGCGATTATGTGGCGGCGGAGAAAGCGTTCAAGGAGTGGGGCAACTGTTGCGATGCGGCCGAAGTGCAAACGCTGGAATCGTTGCTACAGGCGTACGATGATGAGGATCCGGAACTGGCCCAGCGAGCCCTGTCGTCACCGTTCATCCGGCACATGGATGTGGAGTATGCGCGGCTGGCGCGGGATTTACCCCTCCCCAAGGGCGTCTCGATTGCACCGAAAGCGAACGTCATCGAGAATGCGGCCGCTTCGTA] [+] EMBL BX469403 [AGCAGAATCGGCACGAGGANANTGAAATGAACAATCTCGGCGACATACGCAAGCTGGCGGAGCGGGCGTGCAATCTCTACCAGCAGCACGGTTCGCCCGAATCGGGCGCCACCGTGCTGGACAAGGCGGCAAAGATACTGGAGCAGACGCACCCGGAAGACGCGCTGCAGCTGTACAAGCAGGCCGTCGACGTGGTTACGATCGAAGACTCAACGCGCCAGGGCGCCGAATACGCTAGCAAGGTGGCTCGCATCATGGTGAAGCTCGGCATGTACGATCAGGCGGCAGACGCTATACGGCGCGAAATCGGGCTGCACCAGCAGGTCGGTTCGGAGGGTGCCATCGGCCGGCTAGCGGTGGCACTGGTGCTGGTGCAGCTCGCCCGTGGCGATTATGTGGCGGCGGAGAAAGCGTTCAAGGAGTGGGGCAACTGTTGCGATGCGGCCGAAGTGCAAACGCTGGAATCGTTGCTACAGGCGTACGATGATGAGGATCCGGAACTGGCCCAGCGAGCCCTGTCGTCACCGTTCATCCGGCACATGGATGTGGAGTATGCGCGGCTGGCGCGGGATTTACCCCTCCCCAAGGGCGTCTCGATTGCACCGAAAGCGAACGTCATCGAGAATGCGGCCGCTTCGTA] consensusID : consensus_1847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [AAAGCAGCCACCTGCTTCCGGAACGCAAAGTCGCTGGACCTGTGCCGCGACTGTCTGATGAAATCCGCCGACTGTCACCGCCAGAACCGTGCCCTGTTCCACGCGGCCAAGTGTCTCGATCAGGCGATACTGATCTGCAAGGAAATGAACAATCTCGGCGACATACGCAAGCTGGCGGAGCGGGCGTGCAATCTCTACCAGCAGCACGGTTCGCCCGAATCGGGCGCCACCGTGCTGGACAAGGCGGCAAAGATACTGGAGCAGACGCACCCGGAAGACGCGCTGCAGCTGTACAAGCAGGCCGTCGACGTGGTTACGATCGAAGACTCAACGCGCCAGGGCGCCGAATACGCTAGCAAGGTGGCTCGCATCATGGTGAAGCTCGGCATGTACGATCAGGCGGCAGACGCTATACGGCGCGAAATCGGGCTGCACCAGCAGGTCGGTTCGGAGGGTGCCATCGGCCGGCTAGCGGTGGCACTGGTGCTGGTGCAGCTCGCCCGTGGCGATTATGTGGCGGCGGAGAAAGCGTTCAAGGAGTGGGGCAACTGTTGCGATGCGGCCGAAGTGCAAACGCTGGAATCGTTGCTACAGGCGTACGATGATGAGGATCCGGAAC] [+] EMBL BX617961 [AAAGCAGCCACCTGCTTCCGGAACGCAAAGTCGCTGGACCTGTGCCGCGACTGTCTGATGAAATCCGCCGACTGTCACCGCCAGAACCGTGCCCTGTTCCACGCGGCCAAGTGTCTCGATCAGGCGATACTGATCTGCAAGGAAATGAACAATCTCGGCGACATACGCAAGCTGGCGGAGCGGGCGTGCAATCTCTACCAGCAGCACGGTTCGCCCGAATCGGGCGCCACCGTGCTGGACAAGGCGGCAAAGATACTGGAGCAGACGCACCCGGAAGACGCGCTGCAGCTGTACAAGCAGGCCGTCGACGTGGTTACGATCGAAGACTCAACGCGCCAGGGCGCCGAATACGCTAGCAAGGTGGCTCGCATCATGGTGAAGCTCGGCATGTACGATCAGGCGGCAGACGCTATACGGCGCGAAATCGGGCTGCACCAGCAGGTCGGTTCGGAGGGTGCCATCGGCCGGCTAGCGGTGGCACTGGTGCTGGTGCAGCTCGCCCGTGGCGATTATGTGGCGGCGGAGAAAGCGTTCAAGGAGTGGGGCAACTGTTGCGATGCGGCCGAAGTGCAAACGCTGGAATCGTTGCTACAGGCGTACGATGATGAGGATCCGGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1847#0 ------------------------------------------------------------ consensus_1847#1 AAAGCAGCCACCTGCTTCCGGAACGCAAAGTCGCTGGACCTGTGCCGCGACTGTCTGATG 60 consensus_1847#0 ----------------------------------------------------------AG 2 consensus_1847#1 AAATCCGCCGACTGTCACCGCCAGAACCGTGCCCTGTTCCACGCGGCCAAGTGTCTCGAT 120 * consensus_1847#0 CAGAATCGGCACGAGGANANTGAAATGAACAATCTCGGCGACATACGCAAGCTGGCGGAG 62 consensus_1847#1 CAGGCGATACTGATCTGCAAGGAAATGAACAATCTCGGCGACATACGCAAGCTGGCGGAG 180 *** * * *************************************** consensus_1847#0 CGGGCGTGCAATCTCTACCAGCAGCACGGTTCGCCCGAATCGGGCGCCACCGTGCTGGAC 122 consensus_1847#1 CGGGCGTGCAATCTCTACCAGCAGCACGGTTCGCCCGAATCGGGCGCCACCGTGCTGGAC 240 ************************************************************ consensus_1847#0 AAGGCGGCAAAGATACTGGAGCAGACGCACCCGGAAGACGCGCTGCAGCTGTACAAGCAG 182 consensus_1847#1 AAGGCGGCAAAGATACTGGAGCAGACGCACCCGGAAGACGCGCTGCAGCTGTACAAGCAG 300 ************************************************************ consensus_1847#0 GCCGTCGACGTGGTTACGATCGAAGACTCAACGCGCCAGGGCGCCGAATACGCTAGCAAG 242 consensus_1847#1 GCCGTCGACGTGGTTACGATCGAAGACTCAACGCGCCAGGGCGCCGAATACGCTAGCAAG 360 ************************************************************ consensus_1847#0 GTGGCTCGCATCATGGTGAAGCTCGGCATGTACGATCAGGCGGCAGACGCTATACGGCGC 302 consensus_1847#1 GTGGCTCGCATCATGGTGAAGCTCGGCATGTACGATCAGGCGGCAGACGCTATACGGCGC 420 ************************************************************ consensus_1847#0 GAAATCGGGCTGCACCAGCAGGTCGGTTCGGAGGGTGCCATCGGCCGGCTAGCGGTGGCA 362 consensus_1847#1 GAAATCGGGCTGCACCAGCAGGTCGGTTCGGAGGGTGCCATCGGCCGGCTAGCGGTGGCA 480 ************************************************************ consensus_1847#0 CTGGTGCTGGTGCAGCTCGCCCGTGGCGATTATGTGGCGGCGGAGAAAGCGTTCAAGGAG 422 consensus_1847#1 CTGGTGCTGGTGCAGCTCGCCCGTGGCGATTATGTGGCGGCGGAGAAAGCGTTCAAGGAG 540 ************************************************************ consensus_1847#0 TGGGGCAACTGTTGCGATGCGGCCGAAGTGCAAACGCTGGAATCGTTGCTACAGGCGTAC 482 consensus_1847#1 TGGGGCAACTGTTGCGATGCGGCCGAAGTGCAAACGCTGGAATCGTTGCTACAGGCGTAC 600 ************************************************************ consensus_1847#0 GATGATGAGGATCCGGAACTGGCCCAGCGAGCCCTGTCGTCACCGTTCATCCGGCACATG 542 consensus_1847#1 GATGATGAGGATCCGGAAC----------------------------------------- 619 ******************* consensus_1847#0 GATGTGGAGTATGCGCGGCTGGCGCGGGATTTACCCCTCCCCAAGGGCGTCTCGATTGCA 602 consensus_1847#1 ------------------------------------------------------------ consensus_1847#0 CCGAAAGCGAACGTCATCGAGAATGCGGCCGCTTCGTA 640 consensus_1847#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||