These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [GCATGCTCGAGCAGAATNCGCCACGAGGTTTAAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGTAGGCTTCACCCTGGTTGGGTTGATTATGAACCAACCCCCTTTACGCTGAGCGGGTGTGCCGAAACGTCAGCTCTTAATTGATTCAATAATACCAGCCTTTATATCACCCCCCGCGCACCCGTACACCGGTGGTAATTAACAGGTCAGAATACAAGATGCGCTTGCCTCTCTCCACGCGTGTAGATTCGCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAAGCGATGGAGCGATATTGCCCGCATATCAAAGCTTCCGTACAGATGAGATCGGTGACTTTCATCCCCAGTAACGATGGGTACCCTGGGCAGTACCAACGTCATCAAAGCACGCACACGACAGCCGTGCTGACTTGGCCTAATCCCGGNTTGGCCACGGTTAAACCCCCTGGCGAACCTTGGTACACACAACGGTTAACAACACAGGCCAGCCTTGGGGNAACCGGAATCCTNGANTTCAATCNCTTAACGCGAAAACCCGGGGTAACACGCGGTCGTACCAAAACCGGGAACACCCGGGA] [+] EMBL AL696631 [GCATGCTCGAGCAGAATNCGCCACGAGGTTTAAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGTAGGCTTCACCCTGGTTGGGTTGATTATGAACCAACCCCCTTTACGCTGAGCGGGTGTGCCGAAACGTCAGCTCTTAATTGATTCAATAATACCAGCCTTTATATCACCCCCCGCGCACCCGTACACCGGTGGTAATTAACAGGTCAGAATACAAGATGCGCTTGCCTCTCTCCACGCGTGTAGATTCGCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAAGCGATGGAGCGATATTGCCCGCATATCAAAGCTTCCGTACAGATGAGATCGGTGACTTTCATCCCCAGTAACGATGGGTACCCTGGGCAGTACCAACGTCATCAAAGCACGCACACGACAGCCGTGCTGACTTGGCCTAATCCCGGNTTGGCCACGGTTAAACCCCCTGGCGAACCTTGGTACACACAACGGTTAACAACACAGGCCAGCCTTGGGGNAACCGGAATCCTNGANTTCAATCNCTTAACGCGAAAACCCGGGGTAACACGCGGTCGTACCAAAACCGGGAACACCCGGGA] consensusID : consensus_1855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CGAGGTTAAGAAATAATCGAAAACAAAAAGGGAAATCATATTTCTGAGATCTTCGAAAAAAGGTTGTTTGTGCAAAAAACAACAAAAGCCGTAGCTCCAAATGATTGCAGCCCGCTTCTTCCGCCCATTTGAGCGGCTGGCGGGTAGTAAATTAATTTTATGTGTTTTTAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGAGGCTTCACCCCGGTTGGGTTGATTATGAACCAACCCCGTTACGCTGAGCGGGTGTGCCAAATGTCAGCTCTTAATTGATTCATAGTTCGTAAAAACAGAATCGTCGGAGGAGTGATTTTATATCACCCCCCGGCACCCGTACACCGGTGGTAATTAACAGGTCAAAAAACAAGAATACAAGATGCGCTTGCCTCTTTCCACGCGTGTAGATTCGCCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAACGGATGGAGCGATATTGCCCGCCATATCAAGCTTCCGTACGATGAGATCGGTGACTTTCATCCCCAGTACGATGGGTACCTGGCGTCCACCGTCATCAAGCAGGCCGACACC] [+] EMBL AL694428 [CGAGGTTAAGAAATAATCGAAAACAAAAAGGGAAATCATATTTCTGAGATCTTCGAAAAAAGGTTGTTTGTGCAAAAAACAACAAAAGCCGTAGCTCCAAATGATTGCAGCCCGCTTCTTCCGCCCATTTGAGCGGCTGGCGGGTAGTAAATTAATTTTATGTGTTTTTAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGAGGCTTCACCCCGGTTGGGTTGATTATGAACCAACCCCGTTACGCTGAGCGGGTGTGCCAAATGTCAGCTCTTAATTGATTCATAGTTCGTAAAAACAGAATCGTCGGAGGAGTGATTTTATATCACCCCCCGGCACCCGTACACCGGTGGTAATTAACAGGTCAAAAAACAAGAATACAAGATGCGCTTGCCTCTTTCCACGCGTGTAGATTCGCCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAACGGATGGAGCGATATTGCCCGCCATATCAAGCTTCCGTACGATGAGATCGGTGACTTTCATCCCCAGTACGATGGGTACCTGGCGTCCACCGTCATCAAGCAGGCCGACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1855#0 ------------------------------------------------------------ consensus_1855#1 CGAGGTTAAGAAATAATCGAAAACAAAAAGGGAAATCATATTTCTGAGATCTTCGAAAAA 60 consensus_1855#0 ------------------------------------------------------------ consensus_1855#1 AGGTTGTTTGTGCAAAAAACAACAAAAGCCGTAGCTCCAAATGATTGCAGCCCGCTTCTT 120 consensus_1855#0 ---------------GCATGCTCG-AGCAGAATN-CGCCACGAGGTTTAAATGTGCCACA 43 consensus_1855#1 CCGCCCATTTGAGCGGCTGGCGGGTAGTAAATTAATTTTATGTGTTTTTAATGTGCCACA 180 ** ** * ** * * * * * * *** *********** consensus_1855#0 AACGCGGGCAGTCTTCTCGAGCGTAGGCTTCACCCTGGTTGGGTTGATTATGAACCAACC 103 consensus_1855#1 AACGCGGGCAGTCTTCTCGAGCG-AGGCTTCACCCCGGTTGGGTTGATTATGAACCAACC 239 *********************** *********** ************************ consensus_1855#0 CCCTTTACGCTGAGCGGGTGTGCCGAAACGTCAGCTCTTAATTGATTCA------ATAAT 157 consensus_1855#1 CCGTT-ACGCTGAGCGGGTGTGCC-AAATGTCAGCTCTTAATTGATTCATAGTTCGTAAA 297 ** ** ****************** *** ******************** *** consensus_1855#0 ACCAGC----------------CTTTATATCACCCCCCGCGCACCCGTACACCGGTGGTA 201 consensus_1855#1 AACAGAATCGTCGGAGGAGTGATTTTATATCACCCCCCG-GCACCCGTACACCGGTGGTA 356 * *** **************** ******************** consensus_1855#0 ATTAACAGGTCA--------GAATACAAGATGCGCTTGCCTCTCTCCACGCGTGTAGATT 253 consensus_1855#1 ATTAACAGGTCAAAAAACAAGAATACAAGATGCGCTTGCCTCTTTCCACGCGTGTAGATT 416 ************ *********************** **************** consensus_1855#0 CGCC-GCTGCATCTGTGAAGCTGACGGCAGGGACGATAAAGCGATGGAGCGATATTGCCC 312 consensus_1855#1 CGCCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAACGGATGGAGCGATATTGCCC 476 **** *********************************** ****************** consensus_1855#0 GC-ATATCAAAGCTTCCGTACAGATGAGATCGGTGACTTTCATCCCCAGTAACGATGGGT 371 consensus_1855#1 GCCATATCAA-GCTTCCGTAC-GATGAGATCGGTGACTTTCATCCCCAGTA-CGATGGGT 533 ** ******* ********** ***************************** ******** consensus_1855#0 ACCCTGGGCAGTACCAACGTCATCAAAGCACGCACACGACAGCCGTGCTGACTTGGCCTA 431 consensus_1855#1 ACCTGGCGT----CCACCGTCATCAA-GCAGGCCGACACC-------------------- 568 *** * * *** ********* *** ** ** * consensus_1855#0 ATCCCGGNTTGGCCACGGTTAAACCCCCTGGCGAACCTTGGTACACACAACGGTTAACAA 491 consensus_1855#1 ------------------------------------------------------------ consensus_1855#0 CACAGGCCAGCCTTGGGGNAACCGGAATCCTNGANTTCAATCNCTTAACGCGAAAACCCG 551 consensus_1855#1 ------------------------------------------------------------ consensus_1855#0 GGGTAACACGCGGTCGTACCAAAACCGGGAACACCCGGGA 591 consensus_1855#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||