cluster # 1857

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Anopheles gambiae
cluster # 1857 cluster # 1857 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1857#0 length = 707 sequences # 1

consensus_1857#1 length = 660 sequences # 1

consensusID : consensus_1857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 707
fasta sequence

                              [CCGTACATTTCTATGATTTATTACTTTTCGGGATTCATCAAACCAACCATACAGAAAGAGTACAAACGTATTTGTTTACATAATGAACTAAATTATTCCATCCAAATTTGATCGATTTTATCGATACCTTCTGGTTCTGGTTATACTTTTTCGCATTAGTTTCGCATTGCGCTTGTGACTTGTTAGTTCCTTTGTTCCTTTTTTTCTGTTCTCTTTTGTGTTGCTACTCTTTCGTTGTCTCTTTACTTTCAAACCATTTTGCTTAATATTGACAACAGCGGAAATGGCTGCCTACCCTCAGTTAGAATGCGCTCACGTTTTTACATAACATAAAGATATAATCTTAAAGATAAAAAAAAACACACACACACGCACCCGCACACACAAACCCAATCCGACACGCTTTTTGGTGGGCCATACGGAGGAAAATGGAACATGTGTTTTTCTCTCTCCGGGTTTATTGATAAACACACACAACACGACGCGTGCACTGCTGTGTTGCACGTTTGTTTCTTTTTAATTAGTAGCGTAAGATCGATAGAAGAGAAATTATGACCACACAGGACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAAGCGGCCGGCGGCAAGAGGAACTGCACGTTTGGTTTATCTGGTCTGGTTTTAAATTCAATTGAGATAAAGTAAAGCCACAGAAGCAAATGAAATTGCAAAGCGTGAAT]

[+] EMBL BM637825             [CCGTACATTTCTATGATTTATTACTTTTCGGGATTCATCAAACCAACCATACAGAAAGAGTACAAACGTATTTGTTTACATAATGAACTAAATTATTCCATCCAAATTTGATCGATTTTATCGATACCTTCTGGTTCTGGTTATACTTTTTCGCATTAGTTTCGCATTGCGCTTGTGACTTGTTAGTTCCTTTGTTCCTTTTTTTCTGTTCTCTTTTGTGTTGCTACTCTTTCGTTGTCTCTTTACTTTCAAACCATTTTGCTTAATATTGACAACAGCGGAAATGGCTGCCTACCCTCAGTTAGAATGCGCTCACGTTTTTACATAACATAAAGATATAATCTTAAAGATAAAAAAAAACACACACACACGCACCCGCACACACAAACCCAATCCGACACGCTTTTTGGTGGGCCATACGGAGGAAAATGGAACATGTGTTTTTCTCTCTCCGGGTTTATTGATAAACACACACAACACGACGCGTGCACTGCTGTGTTGCACGTTTGTTTCTTTTTAATTAGTAGCGTAAGATCGATAGAAGAGAAATTATGACCACACAGGACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAAGCGGCCGGCGGCAAGAGGAACTGCACGTTTGGTTTATCTGGTCTGGTTTTAAATTCAATTGAGATAAAGTAAAGCCACAGAAGCAAATGAAATTGCAAAGCGTGAAT]




>consensus_1857#0
CCGTACATTTCTATGATTTATTACTTTTCGGGATTCATCAAACCAACCATACAGAAAGAG
TACAAACGTATTTGTTTACATAATGAACTAAATTATTCCATCCAAATTTGATCGATTTTA
TCGATACCTTCTGGTTCTGGTTATACTTTTTCGCATTAGTTTCGCATTGCGCTTGTGACT
TGTTAGTTCCTTTGTTCCTTTTTTTCTGTTCTCTTTTGTGTTGCTACTCTTTCGTTGTCT
CTTTACTTTCAAACCATTTTGCTTAATATTGACAACAGCGGAAATGGCTGCCTACCCTCA
GTTAGAATGCGCTCACGTTTTTACATAACATAAAGATATAATCTTAAAGATAAAAAAAAA
CACACACACACGCACCCGCACACACAAACCCAATCCGACACGCTTTTTGGTGGGCCATAC
GGAGGAAAATGGAACATGTGTTTTTCTCTCTCCGGGTTTATTGATAAACACACACAACAC
GACGCGTGCACTGCTGTGTTGCACGTTTGTTTCTTTTTAATTAGTAGCGTAAGATCGATA
GAAGAGAAATTATGACCACACAGGACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAA
GCGGCCGGCGGCAAGAGGAACTGCACGTTTGGTTTATCTGGTCTGGTTTTAAATTCAATT
GAGATAAAGTAAAGCCACAGAAGCAAATGAAATTGCAAAGCGTGAAT

consensusID : consensus_1857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [CCGAAACCAATCATACAGAAAGAGTACAAACGTATTTTGTTTACATATTGAACTAAACTATTCCATCCAAATTTGATCGATTTTATCGATACCTTCTGGTTCTGGTTATACTTTTTCGTATTAGTTTCGCATTGCGCATTTGACTTGTTAGTTCCTTTGTTCCTTTTTTCTCTGTTCTCTTTTGTGTTGCTACTCTTTAGTTGTCTCTTTACCTTCAAACCATTTTGCTTTACATATTGACAACAGTTGGATTGTTCGTGTCGGAAATGGCTCCCTACCCTCAGTTAGAATGCGCTCTCGTTTTTACATAAAAGTGCAAACATAAAGATATAATCTTAAAGATAAAAACACACACACACACGCACCCGCACACACAAACCCAATCCGACACGCTTTTTGGTGGGCCATACGGAGGAAAATGGAACATGTGTTTTTCTCTCTCCGGGTTTATTGATAAAACACACACAACACGACGCGTGCACTGCTGTGTTGCACGTTTGTTTCTTTTTAATTAGTAGCGTAAGATCGATAGAAGAGAAATTAAGCTGATAAAACCACACAGGACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAAGTGGCCGGTGGCAAGAGGAACTGCACGTTTGGTTTATCTGGTCTGGTTTTAATTCAATTGA]

[+] EMBL BM604221             [CCGAAACCAATCATACAGAAAGAGTACAAACGTATTTTGTTTACATATTGAACTAAACTATTCCATCCAAATTTGATCGATTTTATCGATACCTTCTGGTTCTGGTTATACTTTTTCGTATTAGTTTCGCATTGCGCATTTGACTTGTTAGTTCCTTTGTTCCTTTTTTCTCTGTTCTCTTTTGTGTTGCTACTCTTTAGTTGTCTCTTTACCTTCAAACCATTTTGCTTTACATATTGACAACAGTTGGATTGTTCGTGTCGGAAATGGCTCCCTACCCTCAGTTAGAATGCGCTCTCGTTTTTACATAAAAGTGCAAACATAAAGATATAATCTTAAAGATAAAAACACACACACACACGCACCCGCACACACAAACCCAATCCGACACGCTTTTTGGTGGGCCATACGGAGGAAAATGGAACATGTGTTTTTCTCTCTCCGGGTTTATTGATAAAACACACACAACACGACGCGTGCACTGCTGTGTTGCACGTTTGTTTCTTTTTAATTAGTAGCGTAAGATCGATAGAAGAGAAATTAAGCTGATAAAACCACACAGGACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAAGTGGCCGGTGGCAAGAGGAACTGCACGTTTGGTTTATCTGGTCTGGTTTTAATTCAATTGA]




>consensus_1857#1
CCGAAACCAATCATACAGAAAGAGTACAAACGTATTTTGTTTACATATTGAACTAAACTA
TTCCATCCAAATTTGATCGATTTTATCGATACCTTCTGGTTCTGGTTATACTTTTTCGTA
TTAGTTTCGCATTGCGCATTTGACTTGTTAGTTCCTTTGTTCCTTTTTTCTCTGTTCTCT
TTTGTGTTGCTACTCTTTAGTTGTCTCTTTACCTTCAAACCATTTTGCTTTACATATTGA
CAACAGTTGGATTGTTCGTGTCGGAAATGGCTCCCTACCCTCAGTTAGAATGCGCTCTCG
TTTTTACATAAAAGTGCAAACATAAAGATATAATCTTAAAGATAAAAACACACACACACA
CGCACCCGCACACACAAACCCAATCCGACACGCTTTTTGGTGGGCCATACGGAGGAAAAT
GGAACATGTGTTTTTCTCTCTCCGGGTTTATTGATAAAACACACACAACACGACGCGTGC
ACTGCTGTGTTGCACGTTTGTTTCTTTTTAATTAGTAGCGTAAGATCGATAGAAGAGAAA
TTAAGCTGATAAAACCACACAGGACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAAG
TGGCCGGTGGCAAGAGGAACTGCACGTTTGGTTTATCTGGTCTGGTTTTAATTCAATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1857#0      CCGTACATTTCTATGATTTATTACTTTTCGGGATTCATCAAACCAACCATACAGAAAGAG 60
consensus_1857#1      ------------------------------------CCGAAACCAATCATACAGAAAGAG 24
                                                             ******* *************

consensus_1857#0      TACAAACGTATTT-GTTTACATAATGAACTAAATTATTCCATCCAAATTTGATCGATTTT 119
consensus_1857#1      TACAAACGTATTTTGTTTACATATTGAACTAAACTATTCCATCCAAATTTGATCGATTTT 84
                      ************* ********* ********* **************************

consensus_1857#0      ATCGATACCTTCTGGTTCTGGTTATACTTTTTCGCATTAGTTTCGCATTGCGCTTGTGAC 179
consensus_1857#1      ATCGATACCTTCTGGTTCTGGTTATACTTTTTCGTATTAGTTTCGCATTGCGCATTTGAC 144
                      ********************************** ****************** * ****

consensus_1857#0      TTGTTAGTTCCTTTGTTCCTTTTTT-TCTGTTCTCTTTTGTGTTGCTACTCTTTCGTTGT 238
consensus_1857#1      TTGTTAGTTCCTTTGTTCCTTTTTTCTCTGTTCTCTTTTGTGTTGCTACTCTTTAGTTGT 204
                      ************************* **************************** *****

consensus_1857#0      CTCTTTACTTTCAAACCATTTTGCTTAA--TATTGACAACAG---------------CGG 281
consensus_1857#1      CTCTTTACCTTCAAACCATTTTGCTTTACATATTGACAACAGTTGGATTGTTCGTGTCGG 264
                      ******** ***************** *  ************               ***

consensus_1857#0      AAATGGCTGCCTACCCTCAGTTAGAATGCGCTCACGTTTTTACATAA---------CATA 332
consensus_1857#1      AAATGGCTCCCTACCCTCAGTTAGAATGCGCTCTCGTTTTTACATAAAAGTGCAAACATA 324
                      ******** ************************ *************         ****

consensus_1857#0      AAGATATAATCTTAAAGATAAAAAAAAACACACACACACGCACCCGCACACACAAACCCA 392
consensus_1857#1      AAGATATAATCTTAAAGATAAAAACA--CACACACACACGCACCCGCACACACAAACCCA 382
                      ************************ *  ********************************

consensus_1857#0      ATCCGACACGCTTTTTGGTGGGCCATACGGAGGAAAATGGAACATGTGTTTTTCTCTCTC 452
consensus_1857#1      ATCCGACACGCTTTTTGGTGGGCCATACGGAGGAAAATGGAACATGTGTTTTTCTCTCTC 442
                      ************************************************************

consensus_1857#0      CGGGTTTATTGATAAA-CACACACAACACGACGCGTGCACTGCTGTGTTGCACGTTTGTT 511
consensus_1857#1      CGGGTTTATTGATAAAACACACACAACACGACGCGTGCACTGCTGTGTTGCACGTTTGTT 502
                      **************** *******************************************

consensus_1857#0      TCTTTTTAATTAGTAGCGTAAGATCGATAGAAGAGAAATTATG--------ACCACACAG 563
consensus_1857#1      TCTTTTTAATTAGTAGCGTAAGATCGATAGAAGAGAAATTAAGCTGATAAAACCACACAG 562
                      ***************************************** *        *********

consensus_1857#0      GACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAAGCGGCCGGCGGCAAGAGGAACTG 623
consensus_1857#1      GACACAGATAGACAAAGGCTTGTTATGAGCGAAAGAAGTGGCCGGTGGCAAGAGGAACTG 622
                      ************************************** ****** **************

consensus_1857#0      CACGTTTGGTTTATCTGGTCTGGTTTTAAATTCAATTGAGATAAAGTAAAGCCACAGAAG 683
consensus_1857#1      CACGTTTGGTTTATCTGGTCTGGTTTTAA-TTCAATTGA--------------------- 660
                      ***************************** *********                     

consensus_1857#0      CAAATGAAATTGCAAAGCGTGAAT 707
consensus_1857#1      ------------------------