These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [GTGTACAAGAAACTGGTGGTATGAATCCTGCTTCAGTTATAAAAGATTGAGTTTTCAATTAATTACCTTGGCGGCATAAACGAAATAAGAAGAAATCAATTTTTGTTTTTAAATATAACACTGTGATAACGGAATTATGACGCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCAGTAATAATGTATTTTTCGTTGATTCAACATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGCCCATATTCAGTTTACTATTTTATGTGATGTTGAAGGATTCTAAAGCAAGTAGAAAGGCAAATTATCACAGTCGCATTTTCTACGGCCTTGTGTTTTCTGTTTTGGGAGATTTTTTATTAAATTATGAATTATTTGAACCCGGCATGGGTGCTTTTGGTGTGGCACAAATATTCTACATATGGGCGTTTGGAATGAAACTGAACAAACTATGGATCGGTACAATTTTATACCTAACAGGGTTCTTAGCAATCACTCTATTTTTTGAAAATTTAAACACGGTGATTAAAATTTGCCTACCATTTTATGCTATTCTATTGTTAACCATGTGCTGGAGATCATTGGCTAGAATCGACAGATCGGATAGCTATTTGCGGATTGTGTGTGGCATCGCTAGTATATTATTTGTAATATCTGACGGTATAATAGCAATCGACAAATTTTTCACTCCTATAAAATCGGCTCAAACGTATATCATGATAACGTACTATCTCGCACAAGTCGGAATCACGCTTAGT] [+] EMBL BX623833 [GTGTACAAGAAACTGGTGGTATGAATCCTGCTTCAGTTATAAAAGATTGAGTTTTCAATTAATTACCTTGGCGGCATAAACGAAATAAGAAGAAATCAATTTTTGTTTTTAAATATAACACTGTGATAACGGAATTATGACGCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCAGTAATAATGTATTTTTCGTTGATTCAACATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGCCCATATTCAGTTTACTATTTTATGTGATGTTGAAGGATTCTAAAGCAAGTAGAAAGGCAAATTATCACAGTCGCATTTTCTACGGCCTTGTGTTTTCTGTTTTGGGAGATTTTTTATTAAATTATGAATTATTTGAACCCGGCATGGGTGCTTTTGGTGTGGCACAAATATTCTACATATGGGCGTTTGGAATGAAACTGAACAAACTATGGATCGGTACAATTTTATACCTAACAGGGTTCTTAGCAATCACTCTATTTTTTGAAAATTTAAACACGGTGATTAAAATTTGCCTACCATTTTATGCTATTCTATTGTTAACCATGTGCTGGAGATCATTGGCTAGAATCGACAGATCGGATAGCTATTTGCGGATTGTGTGTGGCATCGCTAGTATATTATTTGTAATATCTGACGGTATAATAGCAATCGACAAATTTTTCACTCCTATAAAATCGGCTCAAACGTATATCATGATAACGTACTATCTCGCACAAGTCGGAATCACGCTTAGT] consensusID : consensus_1858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [AGAATCCCCCGAGGTTAAATTGAGCATAGTGGAGAATACTCAAGTGAAGAAATTTTAGATATAGGTATACAATTGTTATTCGTGTACAAGAAACTGGTGATTGAGTTTTCAATTAATTACCTATGGCGGCATAAACGAAATAAGAAGAAATTAATTTTTGTATTTTGAATATAACACTAGTGATAACGGAATTATGACGCCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCGGTAATAATGTATTTTTCGTTGATTCAACCATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGNCCATATTCNAGTTTACTATATTTATAGTGATGTTGCAGGATTTCTAAAGGCAAGTAGCAAAAGCCAATTATCACAGTCGCCATTTTCTACGGGCCTATGGTGTTTACTAGTGTGGGCAGANATTCTTCATTAAATTATGACACTTCATTTTGAAACCCCGGCCATGGGTGCTATAACGGTCGGTGGCCACAAATATTCTACATATGGGCGTTGGACCTGCAAACTAAACAAACTATGGCATTGGTACAATTTTATACCCTAACAGGGGTTCTTAGCNATCACTCTANTCTCTGAAACTTT] [+] EMBL AL694437 [AGAATCCCCCGAGGTTAAATTGAGCATAGTGGAGAATACTCAAGTGAAGAAATTTTAGATATAGGTATACAATTGTTATTCGTGTACAAGAAACTGGTGATTGAGTTTTCAATTAATTACCTATGGCGGCATAAACGAAATAAGAAGAAATTAATTTTTGTATTTTGAATATAACACTAGTGATAACGGAATTATGACGCCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCGGTAATAATGTATTTTTCGTTGATTCAACCATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGNCCATATTCNAGTTTACTATATTTATAGTGATGTTGCAGGATTTCTAAAGGCAAGTAGCAAAAGCCAATTATCACAGTCGCCATTTTCTACGGGCCTATGGTGTTTACTAGTGTGGGCAGANATTCTTCATTAAATTATGACACTTCATTTTGAAACCCCGGCCATGGGTGCTATAACGGTCGGTGGCCACAAATATTCTACATATGGGCGTTGGACCTGCAAACTAAACAAACTATGGCATTGGTACAATTTTATACCCTAACAGGGGTTCTTAGCNATCACTCTANTCTCTGAAACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1858#0 ------------------------------------------------------GTGTAC 6 consensus_1858#1 AGAATCCCCCGAGGTTAAATTGAGCATAGTGGAGAATACTCAAGTGAAGAAATTTTAGAT 60 * * consensus_1858#0 AAGAAACTGGTGGTATGAATCCTGCTTCAGTTATAAAAGATTGAGTTTTCAATTAATTAC 66 consensus_1858#1 ATAGGTATACAATTGTTATTCGTGTACAAGAAACTGGTGATTGAGTTTTCAATTAATTAC 120 * * * * * ** ** ** * ********************** consensus_1858#0 CT-TGGCGGCATAAACGAAATAAGAAGAAATCAATTTTTGT-TTTTAAATATAACACT-G 123 consensus_1858#1 CTATGGCGGCATAAACGAAATAAGAAGAAATTAATTTTTGTATTTTGAATATAACACTAG 180 ** **************************** ********* **** *********** * consensus_1858#0 TGATAACGGAATTATGACGC-AAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAA 182 consensus_1858#1 TGATAACGGAATTATGACGCCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAA 240 ******************** *************************************** consensus_1858#0 TGCTGATACCGTTTATAACATCAGTAATAATGTATTTTTCGTTGATTCAAC-ATACGGAA 241 consensus_1858#1 TGCTGATACCGTTTATAACATCGGTAATAATGTATTTTTCGTTGATTCAACCATACGGAA 300 ********************** **************************** ******** consensus_1858#0 CGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGCCCATATTCA-GTTTACTAT-TTT 299 consensus_1858#1 CGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGNCCATATTCNAGTTTACTATATTT 360 ************************************ ******** ********* *** consensus_1858#0 AT-GTGATGTTGAAGGATTCT--AAAGCAAGTAG-AAAGGCAAATTATCACAGTCGC-AT 354 consensus_1858#1 ATAGTGATGTTGCAGGATTTCTAAAGGCAAGTAGCAAAAGCCAATTATCACAGTCGCCAT 420 ** ********* ****** ** ******** *** ** *************** ** consensus_1858#0 TTTCTACGGCCTT---GTGTTTTCTGTTTTGGG---AGATTTTTTATTAAATTATGA--- 405 consensus_1858#1 TTTCTACGGGCCTATGGTGTTTACTAGTGTGGGCAGANATTCTTCATTAAATTATGACAC 480 ********* * * ****** ** * **** * *** ** ************ consensus_1858#0 ---ATTATTTGAACCCGGC-ATGGGTGCTTT--TGGT--GTGGC-ACAAATATTCTACAT 456 consensus_1858#1 TTCATTTTGAAACCCCGGCCATGGGTGCTATAACGGTCGGTGGCCACAAATATTCTACAT 540 *** * * ****** ********* * *** ***** *************** consensus_1858#0 ATGGGCGTTTGGAATG-AAACTGAACAAACTATGG-ATCGGTACAATTTTATACC-TAAC 513 consensus_1858#1 ATGGGCGTTGGACCTGCAAACTAAACAAACTATGGCATTGGTACAATTTTATACCCTAAC 600 ********* * ** ***** ************ ** **************** **** consensus_1858#0 AGGG-TTCTTAGCAATCACTCTATTTTTTGAAAATTTAAACACGGTGATTAAAATTTGCC 572 consensus_1858#1 AGGGGTTCTTAGCNATCACTCTANTCTCTGAAACTTT----------------------- 637 **** ******** ********* * * ***** *** consensus_1858#0 TACCATTTTATGCTATTCTATTGTTAACCATGTGCTGGAGATCATTGGCTAGAATCGACA 632 consensus_1858#1 ------------------------------------------------------------ consensus_1858#0 GATCGGATAGCTATTTGCGGATTGTGTGTGGCATCGCTAGTATATTATTTGTAATATCTG 692 consensus_1858#1 ------------------------------------------------------------ consensus_1858#0 ACGGTATAATAGCAATCGACAAATTTTTCACTCCTATAAAATCGGCTCAAACGTATATCA 752 consensus_1858#1 ------------------------------------------------------------ consensus_1858#0 TGATAACGTACTATCTCGCACAAGTCGGAATCACGCTTAGT 793 consensus_1858#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||