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Anopheles gambiae
cluster # 1862 cluster # 1862       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1862#0 length = 688 sequences # 1  
consensus_1862#1 length = 683 sequences # 1  

consensusID : consensus_1862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [CCGCCCACGCGTCCGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCAGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTACGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATTGCATAGTGGAAGGATCGTGTTGCTCAACATCCAGTACGATCAACCGGTGATGGAAGTTCACCAGGACTGGGGACCAGTGACAGCGATAAGCTTCCGTACCGATGGTACCGCCATCATGGCCAGTGCCAGTTCAAACGGGCAGGTTGTGTTTTGGGATTTGGAAGAAAAAACCATCGTATCGACACTGATGGCACACGATGATTCAGTGACCGGGCTTCACTTTCTACCTAACGAACCGTTGTTGGTAACGAGCTCGCCAGACAACTCTTTGAAAATGTGGATTTTTGATCTGTCCGATGGTGGGGCACGTTTGTTGCGTTTCCGCGAAGGTCATGCCGCACCGCCCACGTGCATCCGATATCATGGTGCATCCGGTCGGAATATAGTATCAGCGGGTGAAGATTCTTCGTTGAG]

[+] EMBL BM611988             [CCGCCCACGCGTCCGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCAGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTACGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATTGCATAGTGGAAGGATCGTGTTGCTCAACATCCAGTACGATCAACCGGTGATGGAAGTTCACCAGGACTGGGGACCAGTGACAGCGATAAGCTTCCGTACCGATGGTACCGCCATCATGGCCAGTGCCAGTTCAAACGGGCAGGTTGTGTTTTGGGATTTGGAAGAAAAAACCATCGTATCGACACTGATGGCACACGATGATTCAGTGACCGGGCTTCACTTTCTACCTAACGAACCGTTGTTGGTAACGAGCTCGCCAGACAACTCTTTGAAAATGTGGATTTTTGATCTGTCCGATGGTGGGGCACGTTTGTTGCGTTTCCGCGAAGGTCATGCCGCACCGCCCACGTGCATCCGATATCATGGTGCATCCGGTCGGAATATAGTATCAGCGGGTGAAGATTCTTCGTTGAG]


>consensus_1862#0 CCGCCCACGCGTCCGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGT ACTTGGAGATCCCATTTGCAGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGT CGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGAATTTGA AGTCGTGCAAATTGGTGCACAAATTTACGGATTACGATAGCAAAGTAATGCAGCTGGAGC AAGCCCCCGCTCTGGACGTTATCGCCGTAGGATTGCATAGTGGAAGGATCGTGTTGCTCA ACATCCAGTACGATCAACCGGTGATGGAAGTTCACCAGGACTGGGGACCAGTGACAGCGA TAAGCTTCCGTACCGATGGTACCGCCATCATGGCCAGTGCCAGTTCAAACGGGCAGGTTG TGTTTTGGGATTTGGAAGAAAAAACCATCGTATCGACACTGATGGCACACGATGATTCAG TGACCGGGCTTCACTTTCTACCTAACGAACCGTTGTTGGTAACGAGCTCGCCAGACAACT CTTTGAAAATGTGGATTTTTGATCTGTCCGATGGTGGGGCACGTTTGTTGCGTTTCCGCG AAGGTCATGCCGCACCGCCCACGTGCATCCGATATCATGGTGCATCCGGTCGGAATATAG TATCAGCGGGTGAAGATTCTTCGTTGAG



consensusID : consensus_1862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [CCGGTGCTATTGTGCTGCGGAATGTATTGAATCGGCGTGCGTGCGATTTATTTCGAAAAAAGTAAGATAGAACCATGAATAGCAGCCATCTATTTCAACCAAACCGAGCCCTTGGCTACGTTAGCAATCATATACCTCCCAACGTACGCTACATTGACCAGAGGCGCGAGAATGTTGTGATCACTTGTGTTGGACGTTCGTTCCACGTTTACGGCTGCAACAGCTTTCGTCTGATTCGTACTGGCCGAATTCATCCGGCCAACATCACTGCCATCGCCGCGGATGGGTTCTTAACGTATGTTGCCGCCGGCAACCTCATCTACGGATGGCGATCGAGCGTGGAACTGCGCAAAGTGTATCGCGGGCATGAGAAGCCGGTACGTCTGCTGTTGCCGTTCGCCAAACACCTCATATCAGTGGATGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCGGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTTCGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATT]

[+] EMBL BM604189             [CCGGTGCTATTGTGCTGCGGAATGTATTGAATCGGCGTGCGTGCGATTTATTTCGAAAAAAGTAAGATAGAACCATGAATAGCAGCCATCTATTTCAACCAAACCGAGCCCTTGGCTACGTTAGCAATCATATACCTCCCAACGTACGCTACATTGACCAGAGGCGCGAGAATGTTGTGATCACTTGTGTTGGACGTTCGTTCCACGTTTACGGCTGCAACAGCTTTCGTCTGATTCGTACTGGCCGAATTCATCCGGCCAACATCACTGCCATCGCCGCGGATGGGTTCTTAACGTATGTTGCCGCCGGCAACCTCATCTACGGATGGCGATCGAGCGTGGAACTGCGCAAAGTGTATCGCGGGCATGAGAAGCCGGTACGTCTGCTGTTGCCGTTCGCCAAACACCTCATATCAGTGGATGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCGGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTTCGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATT]


>consensus_1862#1 CCGGTGCTATTGTGCTGCGGAATGTATTGAATCGGCGTGCGTGCGATTTATTTCGAAAAA AGTAAGATAGAACCATGAATAGCAGCCATCTATTTCAACCAAACCGAGCCCTTGGCTACG TTAGCAATCATATACCTCCCAACGTACGCTACATTGACCAGAGGCGCGAGAATGTTGTGA TCACTTGTGTTGGACGTTCGTTCCACGTTTACGGCTGCAACAGCTTTCGTCTGATTCGTA CTGGCCGAATTCATCCGGCCAACATCACTGCCATCGCCGCGGATGGGTTCTTAACGTATG TTGCCGCCGGCAACCTCATCTACGGATGGCGATCGAGCGTGGAACTGCGCAAAGTGTATC GCGGGCATGAGAAGCCGGTACGTCTGCTGTTGCCGTTCGCCAAACACCTCATATCAGTGG ATGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCC CATTTGCGGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACA AAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGGAATTTGAAGTCGTGCAAA TTGGTGCACAAATTTACGGATTTCGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCT CTGGACGTTATCGCCGTAGGATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1862#0      CCGCCCACGCGTCCGAGAGTAGTCTGCTGAA--GATATGGATCGTGTCCACG-CAGGAGC 57
consensus_1862#1      CCGGTGCTATTGTGCTGCGGAATGTATTGAATCGGCGTGCGTGCGATTTATTTCGAAAAA 60
                      ***             * * * * *  ****  *   **  *    *  *   *   *  

consensus_1862#0      TGTACT-TGGAGATCCCATTTGCAGCGCACACGTTTGAA--ATATCG-GCCATCG--TGC 111
consensus_1862#1      AGTAAGATAGAACCATGAATAGCAGC-CATCTATTTCAACCAAACCGAGCCCTTGGCTAC 119
                       ***   * **      * * ***** **    *** **  * * ** *** * *  * *

consensus_1862#0      ATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGT 171
consensus_1862#1      GTTAGCAATCATATACCTCCCAACGTACGCT--ACATTGACCAGAGGCG-CGAGAATGTT 176
                       *      ** ****    * **  *  ***    *  * **** ** * *   *    *

consensus_1862#0      GGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTACGATAGCA---AAGTAA 228
consensus_1862#1      GTGATCACTTGTGTTGGACGTTCGTTC-CACGTTTACGG-CTGCAACAGCTTTCGTCTGA 234
                      *  **     **  ** *  ** ** * **  *******  * * * ***       * *

consensus_1862#0      TGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATTGCATAG----TGGA 284
consensus_1862#1      TTCGTACTGGCCGAATTCATCCGGCCAACATCACTGCCATCGCCGCGGATGGGTTCTTAA 294
                      * *     *  * *   *   *     ** * *  *** * *    * ** *    *  *

consensus_1862#0      AGGATCGTGTTGCT--CAACATCCAGTACGAT---CAACCGGTGATGGAAGTTCACCAGG 339
consensus_1862#1      CGTATGTTGCCGCCGGCAACCTCATCTACGGATGGCGATCGAGCGTGGAACTGCGCAAAG 354
                       * **  **  **   **** **   ****     * * **    ***** * * * * *

consensus_1862#0      ACTGGGGACCAGTGACAGCGATAAGCTTCCGTACCGATGGTACCGCCATCATGGCCAGTG 399
consensus_1862#1      T----GTATCGCGGGCA-TGAGAAGC--CGGTACGTCTGCTGTTGCCGT--TCGCCAA-- 403
                           * * *   * **  ** ****  * ****   ** *   *** *  * ****   

consensus_1862#0      CCAGTTCAAACGGGCAGGTTGTGTTTTGGGATTTGGAAGAAAAAACCATCGTATCGACAC 459
consensus_1862#1      ACACCTCATATCAGTGGATGAGAGT----AGTCTGCTGAAGATATGGATCGTGTCCACGC 459
                       **  *** *   *  * *     *      * **    * * *   ***** ** ** *

consensus_1862#0      TGATG--GCACACGATGATTCAGTGACCGGGCTTCACTTTCTACCTAACGAACCGTTGTT 517
consensus_1862#1      AGGAGCTGTACTTGGAGATCCCATTTGCGGCGCACACGTTTGAAATATCGG-CCATCGT- 517
                       *  *  * **  *  *** *  *   ***    *** **  *  ** **  ** * ** 

consensus_1862#0      GGTAACGAGC-TCGCCAGACAACTCTTTGAAAATGTGGATTTTTGATCTGTCCGATGGTG 576
consensus_1862#1      -GCATCCAGCGTCGTATAAAAAC------AAAATTTTG---CTTGGTAGCGCCCAGGGGG 567
                       * * * *** ***    * ***      ***** * *    *** *    ** * ** *

consensus_1862#0      GGGCACGTTTGTTGCGTTTCCGCGAAGGTCATGCCGCACCGCCCACGTGCA---TCCGAT 633
consensus_1862#1      GACTGCAGCTGTGGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTTCGAT 627
                      *    *   *** *   **    *  *  **    *   * *  *  * *    * ****

consensus_1862#0      ATCATGGTGCATCCGGTCGGAATATAGTATCAGCGGGTGAAGAT-TCTTCGTTGAG-- 688
consensus_1862#1      AGCAAAGTA-ATGCAGCTGGAGCA-AGCCCCCGCTCTGGACGTTATCGCCGTAGGATT 683
                      * **  **  ** * *  ***  * **   * **    ** * * **  *** *    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)