These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GGCAGAATCCCGAGGTTTAATTAATATTTATATAAACACCTGTGTACACGAANCCTGTGTGACGAAAACGTAACGGTAACGAAAGACAAGACATAAACCCAAGTAAAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTATTGTGAGAAAAGGGCACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACAACAGTAGTAACAGTGGGGAAATGTAAAGCAAAAATGCCAAGTNTGGCGGGCGAGNGAGAGCTAAAGTGGCGATAAGGGGTGTGAGGCGTTCTCCTTCACCACTCCTCCAACTCCCGCGATTGGCCGGTACAGTGATCTTNTGATCGCGAAGGTTCGTCTCTCGTGTCCAAATAATACCGTACAGTGGCGATGAGNGCNAGAGCGGTAGAATGCATGATCAGTCATTCAGGTAACATATTCATACAAGGCGCGAAACCATTTTGACAAGCGAAACACCACACAGACCAAACGCAAAACCAACTTCCCTCAATTCGTCACNGGGGTGGCCACTANCTGCCTCTTGTAACCTTTACCCCCAGAGGGAATTGTGGCTATTCANATGGTCGACAAAACACCTCAAATAGCAAGACACGTAGTTGAGGAACATTCAACTACAT] [+] EMBL AL694451 [GGCAGAATCCCGAGGTTTAATTAATATTTATATAAACACCTGTGTACACGAANCCTGTGTGACGAAAACGTAACGGTAACGAAAGACAAGACATAAACCCAAGTAAAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTATTGTGAGAAAAGGGCACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACAACAGTAGTAACAGTGGGGAAATGTAAAGCAAAAATGCCAAGTNTGGCGGGCGAGNGAGAGCTAAAGTGGCGATAAGGGGTGTGAGGCGTTCTCCTTCACCACTCCTCCAACTCCCGCGATTGGCCGGTACAGTGATCTTNTGATCGCGAAGGTTCGTCTCTCGTGTCCAAATAATACCGTACAGTGGCGATGAGNGCNAGAGCGGTAGAATGCATGATCAGTCATTCAGGTAACATATTCATACAAGGCGCGAAACCATTTTGACAAGCGAAACACCACACAGACCAAACGCAAAACCAACTTCCCTCAATTCGTCACNGGGGTGGCCACTANCTGCCTCTTGTAACCTTTACCCCCAGAGGGAATTGTGGCTATTCANATGGTCGACAAAACACCTCAAATAGCAAGACACGTAGTTGAGGAACATTCAACTACAT] consensusID : consensus_1864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [TTGAAAAAAAAAGAACGTGCGTGTACCAATGTAAATGTTACGTTGAATGATGTCGTGCCGAGCGCCGATTCAACGTACATGGAAAGCATTAATTTGTAAGTAGGTAATTGGTTTTTCGCCCTCGGTTTAATGTATGTTCTGCTTTTATTTTAATTTCAAACGTAACTTAAATTAATATTTATATAAACGCCTGTGTACACGAACCCTGTGTGACGAAAACGTAACGGTAACGTAAGACGAGACATAAACCCAAGTAGAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTGTGCGAGAAAAGGGACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACTACAGTAGTAACAGTGGGGAATGTAAGC] [+] EMBL BM580191 [TTGAAAAAAAAAGAACGTGCGTGTACCAATGTAAATGTTACGTTGAATGATGTCGTGCCGAGCGCCGATTCAACGTACATGGAAAGCATTAATTTGTAAGTAGGTAATTGGTTTTTCGCCCTCGGTTTAATGTATGTTCTGCTTTTATTTTAATTTCAAACGTAACTTAAATTAATATTTATATAAACGCCTGTGTACACGAACCCTGTGTGACGAAAACGTAACGGTAACGTAAGACGAGACATAAACCCAAGTAGAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTGTGCGAGAAAAGGGACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACTACAGTAGTAACAGTGGGGAATGTAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1864#0 ------------------------------------------------------------ consensus_1864#1 TTGAAAAAAAAAGAACGTGCGTGTACCAATGTAAATGTTACGTTGAATGATGTCGTGCCG 60 consensus_1864#0 ------------------------------------------------------------ consensus_1864#1 AGCGCCGATTCAACGTACATGGAAAGCATTAATTTGTAAGTAGGTAATTGGTTTTTCGCC 120 consensus_1864#0 -------------------------------GGCAGAATCCCGAGGTTTAATTAATATTT 29 consensus_1864#1 CTCGGTTTAATGTATGTTCTGCTTTTATTTTAATTTCAAACGTAACTTAAATTAATATTT 180 * * * ** *********** consensus_1864#0 ATATAAACACCTGTGTACACGAANCCTGTGTGACGAAAACGTAACGGTAACGAAAGACAA 89 consensus_1864#1 ATATAAACGCCTGTGTACACGAACCCTGTGTGACGAAAACGTAACGGTAACGTAAGACGA 240 ******** ************** **************************** ***** * consensus_1864#0 GACATAAACCCAAGTAAAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATC 149 consensus_1864#1 GACATAAACCCAAGTAGAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATC 300 **************** ******************************************* consensus_1864#0 AAGAGAGAGAGAGAGA------AAGCGTATGTGTGTGCGCGTGTGTATTGTGAGAAAAGG 203 consensus_1864#1 AAGAGAGAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTGT-GCGAGAAAAGG 359 **************** ************************ * * ********* consensus_1864#0 GCACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACAACAGTAGTAAC 263 consensus_1864#1 G-ACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACTACAGTAGTAAC 418 * ********************************************** *********** consensus_1864#0 AGTGGGGAAATGTAAAGCAAAAATGCCAAGTNTGGCGGGCGAGNGAGAGCTAAAGTGGCG 323 consensus_1864#1 AGTGGGGAA-TGTAAGC------------------------------------------- 434 ********* ***** consensus_1864#0 ATAAGGGGTGTGAGGCGTTCTCCTTCACCACTCCTCCAACTCCCGCGATTGGCCGGTACA 383 consensus_1864#1 ------------------------------------------------------------ consensus_1864#0 GTGATCTTNTGATCGCGAAGGTTCGTCTCTCGTGTCCAAATAATACCGTACAGTGGCGAT 443 consensus_1864#1 ------------------------------------------------------------ consensus_1864#0 GAGNGCNAGAGCGGTAGAATGCATGATCAGTCATTCAGGTAACATATTCATACAAGGCGC 503 consensus_1864#1 ------------------------------------------------------------ consensus_1864#0 GAAACCATTTTGACAAGCGAAACACCACACAGACCAAACGCAAAACCAACTTCCCTCAAT 563 consensus_1864#1 ------------------------------------------------------------ consensus_1864#0 TCGTCACNGGGGTGGCCACTANCTGCCTCTTGTAACCTTTACCCCCAGAGGGAATTGTGG 623 consensus_1864#1 ------------------------------------------------------------ consensus_1864#0 CTATTCANATGGTCGACAAAACACCTCAAATAGCAAGACACGTAGTTGAGGAACATTCAA 683 consensus_1864#1 ------------------------------------------------------------ consensus_1864#0 CTACAT 689 consensus_1864#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||