These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [ATCCCCCCGACGGTTATGCCTGTTTTTTTTTTTTTTTCTTTTTTTGGTAAGTAATGCCTGGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAGGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGACCCAGGTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTGTTTTTGCTTCTTTTTTTTTAATACCTAAAATGCAGCACATTTGCTTGCGTGTATGTGTAATTATGTACAATCATTACCGAAAACATCCAAATAAATGCTGTATAGTATGTTCTCTCAAATTGCAGCGCCATTTACACATTGCGGGGAGACGGGGGAAAAAATTACTCCCCCCNCCCACCCCCTCACAATCTCTCTCTCTCTCTCTTCCCCCATTTTTCCGCGGCGGGGGTGATGGGTGCATCGTAAATCAATAGGCAATAGGATGAAATAAAGTCAAAGAGAGCCAGAGACAGACAGAGAGAGAGAGAAAAACG] [+] EMBL AL694461 [ATCCCCCCGACGGTTATGCCTGTTTTTTTTTTTTTTTCTTTTTTTGGTAAGTAATGCCTGGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAGGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGACCCAGGTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTGTTTTTGCTTCTTTTTTTTTAATACCTAAAATGCAGCACATTTGCTTGCGTGTATGTGTAATTATGTACAATCATTACCGAAAACATCCAAATAAATGCTGTATAGTATGTTCTCTCAAATTGCAGCGCCATTTACACATTGCGGGGAGACGGGGGAAAAAATTACTCCCCCCNCCCACCCCCTCACAATCTCTCTCTCTCTCTCTTCCCCCATTTTTCCGCGGCGGGGGTGATGGGTGCATCGTAAATCAATAGGCAATAGGATGAAATAAAGTCAAAGAGAGCCAGAGACAGACAGAGAGAGAGAGAAAAACG] consensusID : consensus_1865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GTTATGCCTAGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAAGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATCGCGCGCATGTGCGCGCTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGCACCCAGCTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTTGTTTTTTGCTTCTTTTTTTTAATACC] [-] EMBL BX624379 [GTTATGCCTAGTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCACTGGCGCCCCAATTAAAAATACCGAAGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAGCAAAATCGCGCGCATGTGCGCGCTGCAATCCTTAAATGACAAATACCTATGAAATAGCGCGCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGCACCCAGCTCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTTGTTTTTTGCTTCTTTTTTTTAATACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1865#0 ATCCCCCCGACGGTTATGCCTGTTTTTTTTTTTTTTTCTTTTTTTGGTAAGTAATGCCTG 60 consensus_1865#1 --------------------------------------------------GTTATGCCTA 10 ** ****** consensus_1865#0 GTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCAC 120 consensus_1865#1 GTGCAGAACTTCTCGTAAGTAGTTTTTTGTGTGGTTTGTTGATAGCGCCCGCAAATGCAC 70 ************************************************************ consensus_1865#0 TGGCGCCCCAATTAAAAATACCGAGGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAG 180 consensus_1865#1 TGGCGCCCCAATTAAAAATACCGAAGAGGTACACGACCGTTTGCGTGCAGCGCAAAGTAG 130 ************************ *********************************** consensus_1865#0 CAAAAT-----------------TGCAATCCTTAAATGACAAATACCTATGAAATAGCGC 223 consensus_1865#1 CAAAATCGCGCGCATGTGCGCGCTGCAATCCTTAAATGACAAATACCTATGAAATAGCGC 190 ****** ************************************* consensus_1865#0 GCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCG-ACCCAGG 282 consensus_1865#1 GCCTCCCGTAAGAAGGCTATATACAATCATTGCAAAGATCGTGCATCGTTCGCACCCAGC 250 **************************************************** ****** consensus_1865#0 TCCATTATCTCATTTTCTCATTGTTTGCCTGTTTT-GTTTTTGCTTCTTTTTTTTTAATA 341 consensus_1865#1 TCCATTATCTCATTTTCTCATTGTTTGCCTGTTTTTGTTTTTTGCTTCTTTTTTTTAATA 310 *********************************** ****** * ************ consensus_1865#0 CCTAAAATGCAGCACATTTGCTTGCGTGTATGTGTAATTATGTACAATCATTACCGAAAA 401 consensus_1865#1 CC---------------------------------------------------------- 312 ** consensus_1865#0 CATCCAAATAAATGCTGTATAGTATGTTCTCTCAAATTGCAGCGCCATTTACACATTGCG 461 consensus_1865#1 ------------------------------------------------------------ consensus_1865#0 GGGAGACGGGGGAAAAAATTACTCCCCCCNCCCACCCCCTCACAATCTCTCTCTCTCTCT 521 consensus_1865#1 ------------------------------------------------------------ consensus_1865#0 CTTCCCCCATTTTTCCGCGGCGGGGGTGATGGGTGCATCGTAAATCAATAGGCAATAGGA 581 consensus_1865#1 ------------------------------------------------------------ consensus_1865#0 TGAAATAAAGTCAAAGAGAGCCAGAGACAGACAGAGAGAGAGAGAAAAACG 632 consensus_1865#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||