These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [TATGTATACTGCCGCCGTAGTTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCTCCAGTTAAAGAGATTTGCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCGATGAGAGATTGTTGCATTTAGCGCTTAAAATCGTGGTGTTGTTTAGCAGCTGCGGTGCTGCCTACGTTTGATTCCTTTTATTTAGTTCCTATGGTCGTTTCAGTGTCATCTTGTTACAAGCAATTGTTATAGCTTTACTGTTTACCAAATATTATAAGTGTAGTGGAGGGAATATTAAACTGATCATGGTCAGGGGGAAAAAAAAGGAAAGATTTCACGGTTAAACTTTAAAATAACGAAATTAATCGTTCATATCATTGAAGGCACCAATTTCAAAATTTCTCGACGTAATCTAAACATTGAAATGTTCGTAAGAAAAACAAAAAATTCCATTCCCTTAAAGATGTGCATTCAAAAAGCTTAGCTAGTTACTGTGAATATTAAAAAGAAACTGGTAATAACATAAAACCATGCAATAATCCTATTATATCGAAGTATGTACGAGCAGCA] [+] EMBL BX627080 [TATGTATACTGCCGCCGTAGTTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCTCCAGTTAAAGAGATTTGCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCGATGAGAGATTGTTGCATTTAGCGCTTAAAATCGTGGTGTTGTTTAGCAGCTGCGGTGCTGCCTACGTTTGATTCCTTTTATTTAGTTCCTATGGTCGTTTCAGTGTCATCTTGTTACAAGCAATTGTTATAGCTTTACTGTTTACCAAATATTATAAGTGTAGTGGAGGGAATATTAAACTGATCATGGTCAGGGGGAAAAAAAAGGAAAGATTTCACGGTTAAACTTTAAAATAACGAAATTAATCGTTCATATCATTGAAGGCACCAATTTCAAAATTTCTCGACGTAATCTAAACATTGAAATGTTCGTAAGAAAAACAAAAAATTCCATTCCCTTAAAGATGTGCATTCAAAAAGCTTAGCTAGTTACTGTGAATATTAAAAAGAAACTGGTAATAACATAAAACCATGCAATAATCCTATTATATCGAAGTATGTACGAGCAGCA] consensusID : consensus_1878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CCGCCCACGCGTCCGAGATAACATAGCACACGTGGGATTGCAGAACGAACTAGAAAGTTAACTGTTGCATATGCTGGACAATGTTTGTGGGCTTAAATAGCTGTTAGAGTATTTAATGTGAGGGTTGGAATTGAATGGGTACTAGTTGTTGTAAGTGTAAGAGCCACCAAGAGATATGTATACTGCCGCCGTAGGTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCACCTTCTTACCTCCAGTTAAAGAGATTTTTCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCCATGAG] [+] EMBL BM576333 [CCGCCCACGCGTCCGAGATAACATAGCACACGTGGGATTGCAGAACGAACTAGAAAGTTAACTGTTGCATATGCTGGACAATGTTTGTGGGCTTAAATAGCTGTTAGAGTATTTAATGTGAGGGTTGGAATTGAATGGGTACTAGTTGTTGTAAGTGTAAGAGCCACCAAGAGATATGTATACTGCCGCCGTAGGTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCACCTTCTTACCTCCAGTTAAAGAGATTTTTCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCCATGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1878#0 ------------------------------------------------------------ consensus_1878#1 CCGCCCACGCGTCCGAGATAACATAGCACACGTGGGATTGCAGAACGAACTAGAAAGTTA 60 consensus_1878#0 ------------------------------------------------------------ consensus_1878#1 ACTGTTGCATATGCTGGACAATGTTTGTGGGCTTAAATAGCTGTTAGAGTATTTAATGTG 120 consensus_1878#0 ------------------------------------------------------TATGTA 6 consensus_1878#1 AGGGTTGGAATTGAATGGGTACTAGTTGTTGTAAGTGTAAGAGCCACCAAGAGATATGTA 180 ****** consensus_1878#0 TACTGCCGCCGTAGTTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTGTGTTTTTA 66 consensus_1878#1 TACTGCCGCCGTAGGTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTG----TTTTTA 236 ************** *********************************** ****** consensus_1878#0 CAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGA 126 consensus_1878#1 CAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGA 296 ************************************************************ consensus_1878#0 TGAAAGATTTACTTACC-----------TCCAGTTAAAGAGATTTG-CTTCCCCGAGTGG 174 consensus_1878#1 TGAAAGATTTACTTACCACCTTCTTACCTCCAGTTAAAGAGATTTTTCTTCCCCGAGTGG 356 ***************** ***************** ************* consensus_1878#0 AATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAG 234 consensus_1878#1 AATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAG 416 ************************************************************ consensus_1878#0 CTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAA 294 consensus_1878#1 CTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAA 476 ************************************************************ consensus_1878#0 TTGTTTTTAAAAATGGAGAAGAAATCGATGAGAGATTGTTGCATTTAGCGCTTAAAATCG 354 consensus_1878#1 TTGTTTTTAAAAATGGAGAAGAAATCCATGAG---------------------------- 508 ************************** ***** consensus_1878#0 TGGTGTTGTTTAGCAGCTGCGGTGCTGCCTACGTTTGATTCCTTTTATTTAGTTCCTATG 414 consensus_1878#1 ------------------------------------------------------------ consensus_1878#0 GTCGTTTCAGTGTCATCTTGTTACAAGCAATTGTTATAGCTTTACTGTTTACCAAATATT 474 consensus_1878#1 ------------------------------------------------------------ consensus_1878#0 ATAAGTGTAGTGGAGGGAATATTAAACTGATCATGGTCAGGGGGAAAAAAAAGGAAAGAT 534 consensus_1878#1 ------------------------------------------------------------ consensus_1878#0 TTCACGGTTAAACTTTAAAATAACGAAATTAATCGTTCATATCATTGAAGGCACCAATTT 594 consensus_1878#1 ------------------------------------------------------------ consensus_1878#0 CAAAATTTCTCGACGTAATCTAAACATTGAAATGTTCGTAAGAAAAACAAAAAATTCCAT 654 consensus_1878#1 ------------------------------------------------------------ consensus_1878#0 TCCCTTAAAGATGTGCATTCAAAAAGCTTAGCTAGTTACTGTGAATATTAAAAAGAAACT 714 consensus_1878#1 ------------------------------------------------------------ consensus_1878#0 GGTAATAACATAAAACCATGCAATAATCCTATTATATCGAAGTATGTACGAGCAGCA 771 consensus_1878#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||