cluster # 1886

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Anopheles gambiae
cluster # 1886 cluster # 1886 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1886#0 length = 563 sequences # 1

consensus_1886#1 length = 464 sequences # 1

consensusID : consensus_1886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [CCGGAAAAATATCAAACCGTGGCCAAGGAGCTGGCCACGGCCTACAAGCAGACGGAAGAGCAGAAGCGAAAGATCGCCGAACTTGAGCGCAAACTCCAGTGCTTAACGGACGATGACTTCTACTTGAACGAGCATCAGGGCATTACGGACGATCGCAGAGCGACGGAGTCGGCCCAGAAGGAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGAGGAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCAACATGCTGCAGGCCCGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAACGGCAGGCGTTAAAGTATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGAAGTATAAAAAGCTTCAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATGACGATGATGAAACAGCCGAAGCCAAGGAACCACCGCCGGAGGAACCTGAAGACGAGCAGGAAGAGGAGGAAGAGGAGGAGGAGAGTGAATCGGAGGA]

[+] EMBL BM588830             [CCGGAAAAATATCAAACCGTGGCCAAGGAGCTGGCCACGGCCTACAAGCAGACGGAAGAGCAGAAGCGAAAGATCGCCGAACTTGAGCGCAAACTCCAGTGCTTAACGGACGATGACTTCTACTTGAACGAGCATCAGGGCATTACGGACGATCGCAGAGCGACGGAGTCGGCCCAGAAGGAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGAGGAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCAACATGCTGCAGGCCCGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAACGGCAGGCGTTAAAGTATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGAAGTATAAAAAGCTTCAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATGACGATGATGAAACAGCCGAAGCCAAGGAACCACCGCCGGAGGAACCTGAAGACGAGCAGGAAGAGGAGGAAGAGGAGGAGGAGAGTGAATCGGAGGA]




>consensus_1886#0
CCGGAAAAATATCAAACCGTGGCCAAGGAGCTGGCCACGGCCTACAAGCAGACGGAAGAG
CAGAAGCGAAAGATCGCCGAACTTGAGCGCAAACTCCAGTGCTTAACGGACGATGACTTC
TACTTGAACGAGCATCAGGGCATTACGGACGATCGCAGAGCGACGGAGTCGGCCCAGAAG
GAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGAG
GAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCAACATGCTGCAGGCC
CGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAACGGCAGGCGTTAAAG
TATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGAAGTATAAAAAGCTT
CAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATGACGATGATGAAACA
GCCGAAGCCAAGGAACCACCGCCGGAGGAACCTGAAGACGAGCAGGAAGAGGAGGAAGAG
GAGGAGGAGAGTGAATCGGAGGA

consensusID : consensus_1886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [CCGCCCACGCGTCCGGTGGCATTTGCGCGCAGGGCATTACGGACGATCGCAGAGCGACGGAGTCGGCCCAGAAGGAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGAGGAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCAACATGCTGCAGGCCCGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAACGGCAGGCGTTAAAGTATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGAAGTATAAAAAGCTTCAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATGACGATGATGAAACAGCCGAAGCCAAGGAACCACCGCCGGAGGAACCTTGAAGACGAGCAGGAAGAGGAGGAAGAGGAGGAGGAGAGTGAATCGGAGGAATCGGA]

[+] EMBL BM637675             [CCGCCCACGCGTCCGGTGGCATTTGCGCGCAGGGCATTACGGACGATCGCAGAGCGACGGAGTCGGCCCAGAAGGAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGAGGAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCAACATGCTGCAGGCCCGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAACGGCAGGCGTTAAAGTATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGAAGTATAAAAAGCTTCAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATGACGATGATGAAACAGCCGAAGCCAAGGAACCACCGCCGGAGGAACCTTGAAGACGAGCAGGAAGAGGAGGAAGAGGAGGAGGAGAGTGAATCGGAGGAATCGGA]




>consensus_1886#1
CCGCCCACGCGTCCGGTGGCATTTGCGCGCAGGGCATTACGGACGATCGCAGAGCGACGG
AGTCGGCCCAGAAGGAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGG
AAGAGGAGGACGAGGAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCA
ACATGCTGCAGGCCCGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAAC
GGCAGGCGTTAAAGTATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGA
AGTATAAAAAGCTTCAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATG
ACGATGATGAAACAGCCGAAGCCAAGGAACCACCGCCGGAGGAACCTTGAAGACGAGCAG
GAAGAGGAGGAAGAGGAGGAGGAGAGTGAATCGGAGGAATCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1886#0      CCGGAAAAATATCAAACCGTGGCCAAGGAGCTGGCCACGGCCTACAAGCAGACGGAAGAG 60
consensus_1886#1      ------------------------------------------------------------
                                                                                  

consensus_1886#0      CAGAAGCGAAAGATCGCCGAACTTGAGCGCAAACTCCAGTGCTTAACGGACGATGACTTC 120
consensus_1886#1      ----------------------------------------------CCGCCCACG-CGTC 13
                                                                    * * * * * * **

consensus_1886#0      TACTTGAACGAGCAT-CAGGGCATTACGGACGATCGCAGAGCGACGGAGTCGGCCCAGAA 179
consensus_1886#1      CGGTGGCATTTGCGCGCAGGGCATTACGGACGATCGCAGAGCGACGGAGTCGGCCCAGAA 73
                         * * *   **   ********************************************

consensus_1886#0      GGAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGA 239
consensus_1886#1      GGAAAGCTCACCGGAACTGCAGCCCGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGA 133
                      ************************************************************

consensus_1886#0      GGAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCAACATGCTGCAGGC 299
consensus_1886#1      GGAAAAGAAGGCTGAAAAGCTGGCCAAGCGGTTGAACCGCGAGGTCAACATGCTGCAGGC 193
                      ************************************************************

consensus_1886#0      CCGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAACGGCAGGCGTTAAA 359
consensus_1886#1      CCGGCTCACGAGATTGAAGGAGAAGCAGGAGGAAAAGCATGCCGAACGGCAGGCGTTAAA 253
                      ************************************************************

consensus_1886#0      GTATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGAAGTATAAAAAGCT 419
consensus_1886#1      GTATGCCATGAAAACCAACCAGTATGCCCTCAAGGCTGAGAAGAAGAAGTATAAAAAGCT 313
                      ************************************************************

consensus_1886#0      TCAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATGACGATGATGAAAC 479
consensus_1886#1      TCAGAAGGAGGTGGAAAAAATGGCCGCCATGATGAAGCTGGAGGATGACGATGATGAAAC 373
                      ************************************************************

consensus_1886#0      AGCCGAAGCCAAGGAACCACCGCCGGAGGAACCT-GAAGACGAGCAGGAAGAGGAGGAAG 538
consensus_1886#1      AGCCGAAGCCAAGGAACCACCGCCGGAGGAACCTTGAAGACGAGCAGGAAGAGGAGGAAG 433
                      ********************************** *************************

consensus_1886#0      AGGAGGAGGAGAGTGAATCGGAGGA------ 563
consensus_1886#1      AGGAGGAGGAGAGTGAATCGGAGGAATCGGA 464
                      *************************