These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1892 fasta sequence [CGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACTGTCCCCAGACCAACTCCAGCTACAGGAGAAGATGCGGGACGAGTCCCTACCTCTATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGTTGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCGTTCGTGATACCGTACATTATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATTATCGGACAGTTCTCGAGCCGGGGCAGCGTCGAGGTGTACGATATGGCACCGATCATGCGAGGTGTCGGTTACGGGCAGCTGTTCTCGGTGACCGCTCTAATCACGTACTACTCCTCCCTAATGGCACCAATTGCACGGTACATGATCGACGCGTTCATGTACCCGCTCCCGTGGGCCCACTGTCGCTCGGAATGGCAACCGAACTGCATCGATTCCCTGGCCGGCAGTGCAAGCCCTAATGACAGCTCATCCAATCGCACACTGACCAGTAGTTGGGAGCTTTACTTTACCAAGGTGGTCCTGAAGGAGCTGGATGGCATTGACGATGGAATCGGACTTCCAGATTTGAGACTAACGCTATTCCTGGTCCTATCTTGGTCGCTCGTGTTCCTCACCCTCATAAAAGGTGTTAAAAGCTCCGGCAAAGCGTCCTACTTCCTAGCGCTCTTCCCGTACGTCGTCATGGCGGTGCTGCTTGTCCGCGCTTGCACACTGCCGGGTGCAGTGGACGGTATCGTGTACTTCCTCAAGCCCCAGTGGGACAAAATCTACGACCCGAAGGTGTGGTGCGCCGCCGTCACGCAGTGCTTCTTCTCGCTGTCGATCTGCTTCGGCAACATCATCATGTACTCGTCGTACAACAAGTTCCGGCACAATGTGTACCGCGATGCGACGATCGTGACGTCGATCGATACGTTCACGTCGCTGCTGGCCGGGTGTACAATCTTCGGCATACTGGGACATCTGGCACACGTGACGGGGAAGACGGACGTGGGAAATGTGGTGAAATCCGATGCGGGACTTGCATTTATTTCGTACCCGGAAGCGATCGCAAAGTTCGAGGTGCTGCCGCAAGCATTTTCGGTGCTGTTCTTCCTGATGCTGTTTGTGCTCGGCATCGGCAGCAATGTGGCGATGACGTCGTGCGTGATGACGGTGATAAAGGATCAGTTCCCGCGGGTGCGCAACTGGCAGGCGGCCACGATTATTGCCATCTGTGGCGTGCTGCTCGGTAGCATCTACGTGACGCCGGGCGGTCAGTGTGTGTTGAAGTTGGTGGATTATTACGGCGCCTCATCGATCGCGCTCGTGCTTGCCATTGCTGAGCTGATCGCGATCGGGTGGGTTTACGGCGTGGATCGACTGTGCAAGGACACGGAGTTTATGCTTGGCCATCGGCCCAACCTGTACTGGCGTCTGTGCTGGCGCTGGATCACGCCCCTGCTAATGTTTGTCATTCTCATCTACAACCTTGTCACGCTCGAGCCGCTCATGTACAGGCAGTACGTTTATCCTACGGTCGCTTACGGCATTGGTTGGTGCATTTTTGCCTTTGGGCTTCTGCAGCTTCCGATTTGGGCAGCCTACGCCGTCTACAAGCATAGCGGCAAATCGCTGAACGAGAAAATTAAGAACGCCTTCAAACCGACCGCTGCCTGGGGTCCGATTGATCCTGCCACGCATTACGAGTACAAAAAGTTCATCGA] [+] EMBL AF543192 [CGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACTGTCCCCAGACCAACTCCAGCTACAGGAGAAGATGCGGGACGAGTCCCTACCTCTATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGTTGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCGTTCGTGATACCGTACATTATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATTATCGGACAGTTCTCGAGCCGGGGCAGCGTCGAGGTGTACGATATGGCACCGATCATGCGAGGTGTCGGTTACGGGCAGCTGTTCTCGGTGACCGCTCTAATCACGTACTACTCCTCCCTAATGGCACCAATTGCACGGTACATGATCGACGCGTTCATGTACCCGCTCCCGTGGGCCCACTGTCGCTCGGAATGGCAACCGAACTGCATCGATTCCCTGGCCGGCAGTGCAAGCCCTAATGACAGCTCATCCAATCGCACACTGACCAGTAGTTGGGAGCTTTACTTTACCAAGGTGGTCCTGAAGGAGCTGGATGGCATTGACGATGGAATCGGACTTCCAGATTTGAGACTAACGCTATTCCTGGTCCTATCTTGGTCGCTCGTGTTCCTCACCCTCATAAAAGGTGTTAAAAGCTCCGGCAAAGCGTCCTACTTCCTAGCGCTCTTCCCGTACGTCGTCATGGCGGTGCTGCTTGTCCGCGCTTGCACACTGCCGGGTGCAGTGGACGGTATCGTGTACTTCCTCAAGCCCCAGTGGGACAAAATCTACGACCCGAAGGTGTGGTGCGCCGCCGTCACGCAGTGCTTCTTCTCGCTGTCGATCTGCTTCGGCAACATCATCATGTACTCGTCGTACAACAAGTTCCGGCACAATGTGTACCGCGATGCGACGATCGTGACGTCGATCGATACGTTCACGTCGCTGCTGGCCGGGTGTACAATCTTCGGCATACTGGGACATCTGGCACACGTGACGGGGAAGACGGACGTGGGAAATGTGGTGAAATCCGATGCGGGACTTGCATTTATTTCGTACCCGGAAGCGATCGCAAAGTTCGAGGTGCTGCCGCAAGCATTTTCGGTGCTGTTCTTCCTGATGCTGTTTGTGCTCGGCATCGGCAGCAATGTGGCGATGACGTCGTGCGTGATGACGGTGATAAAGGATCAGTTCCCGCGGGTGCGCAACTGGCAGGCGGCCACGATTATTGCCATCTGTGGCGTGCTGCTCGGTAGCATCTACGTGACGCCGGGCGGTCAGTGTGTGTTGAAGTTGGTGGATTATTACGGCGCCTCATCGATCGCGCTCGTGCTTGCCATTGCTGAGCTGATCGCGATCGGGTGGGTTTACGGCGTGGATCGACTGTGCAAGGACACGGAGTTTATGCTTGGCCATCGGCCCAACCTGTACTGGCGTCTGTGCTGGCGCTGGATCACGCCCCTGCTAATGTTTGTCATTCTCATCTACAACCTTGTCACGCTCGAGCCGCTCATGTACAGGCAGTACGTTTATCCTACGGTCGCTTACGGCATTGGTTGGTGCATTTTTGCCTTTGGGCTTCTGCAGCTTCCGATTTGGGCAGCCTACGCCGTCTACAAGCATAGCGGCAAATCGCTGAACGAGAAAATTAAGAACGCCTTCAAACCGACCGCTGCCTGGGGTCCGATTGATCCTGCCACGCATTACGAGTACAAAAAGTTCATCGA] consensusID : consensus_1889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGAACAACTTCTTCTCGCGCACTTGCCAACTCCTCCACCACACCCTACGACCATGGAAGGACGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACAGTCCCCAGACCAACTCCAGCTACAGGGGAAGATGCGGGACGAGTCCCTACCACCATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGATGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCATTCGTGATACCGTACATCATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATCATCGGACAGTTCTCGAGCCGGGGCAGCGTCAAGGTGTACGATATGGCACCGATCATGCGAGGTAAGTGGAGGCGTCCTTTGGACTTCAGCAATTAGAGAGCTCTTGTAAAATCCTCAACCCAAAATCCTACCACCAAATGTCCCTCCCAGGCGTCGGTTACGGTCAGGTACTGTCGACGACGATCGTCACAACGTACTACGCCTCACTGATGGTGACCACG] [+] EMBL BM603942 [CCGAACAACTTCTTCTCGCGCACTTGCCAACTCCTCCACCACACCCTACGACCATGGAAGGACGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACAGTCCCCAGACCAACTCCAGCTACAGGGGAAGATGCGGGACGAGTCCCTACCACCATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGATGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCATTCGTGATACCGTACATCATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATCATCGGACAGTTCTCGAGCCGGGGCAGCGTCAAGGTGTACGATATGGCACCGATCATGCGAGGTAAGTGGAGGCGTCCTTTGGACTTCAGCAATTAGAGAGCTCTTGTAAAATCCTCAACCCAAAATCCTACCACCAAATGTCCCTCCCAGGCGTCGGTTACGGTCAGGTACTGTCGACGACGATCGTCACAACGTACTACGCCTCACTGATGGTGACCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1889#0 ------------------------------------------------------------ consensus_1889#1 CCGAACAACTTCTTCTCGCGCACTTGCCAACTCCTCCACCACACCCTACGACCATGGAAG 60 consensus_1889#0 --CGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTT 58 consensus_1889#1 GACGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTT 120 ********************************************************** consensus_1889#0 GGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTG 118 consensus_1889#1 GGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTG 180 ************************************************************ consensus_1889#0 ATGTTGAGCTGGCTGTAGGAGGTAAAACTGTCCCCAGACCAACTCCAGCTACAGGAGAAG 178 consensus_1889#1 ATGTTGAGCTGGCTGTAGGAGGTAAAACAGTCCCCAGACCAACTCCAGCTACAGGGGAAG 240 **************************** ************************** **** consensus_1889#0 ATGCGGGACGAGTCCCTACCTCTATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGG 238 consensus_1889#1 ATGCGGGACGAGTCCCTACCACCATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGG 300 ******************** * ************************************* consensus_1889#0 GCAAGGGCGTCGAGTTCCTGTTGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGT 298 consensus_1889#1 GCAAGGGCGTCGAGTTCCTGATGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGT 360 ******************** *************************************** consensus_1889#0 GGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCGTTCGTGATACCGTACATTA 358 consensus_1889#1 GGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCATTCGTGATACCGTACATCA 420 **************************************** ***************** * consensus_1889#0 TAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATTATCGGACAGTTCT 418 consensus_1889#1 TAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATCATCGGACAGTTCT 480 ********************************************** ************* consensus_1889#0 CGAGCCGGGGCAGCGTCGAGGTGTACGATATGGCACCGATCATGCGAGGTGT-CGGTTAC 477 consensus_1889#1 CGAGCCGGGGCAGCGTCAAGGTGTACGATATGGCACCGATCATGCGAGGTAAGTGGAGGC 540 ***************** ******************************** ** * consensus_1889#0 GGGCAGCTGTTCTCGGTGACCGCTCTAATCACGTACTACTCCTCCCTAATGGCACCAATT 537 consensus_1889#1 GTCCTTTGGACTTCAGCAATTAGAGAGCTCTTGTAAAA----TCCTCAAC----CCAAAA 592 * * * ** * * ** *** * *** ** **** consensus_1889#0 GCACGGTACATGATCGACGCGTTCATGTACCCGCTCCCGTGGGCCCACTGTCGCTCGGAA 597 consensus_1889#1 TCCTACCAC-CAAATGTCCCTCCCAGGCGTCGGTTACGGTCAGGT-ACTGTCGACGACGA 650 * ** * * * * ** * * * * * ** * ******* * consensus_1889#0 TGGCAACCGAACTGCATCGATTCCCTGGCCGGCAGTGCAAGCCCTAATGACAGCTCATCC 657 consensus_1889#1 TCGTCAC-AACGTACTACGCCTCACTGATGGTGACCACG--------------------- 688 * * ** * * * ** ** *** * * * consensus_1889#0 AATCGCACACTGACCAGTAGTTGGGAGCTTTACTTTACCAAGGTGGTCCTGAAGGAGCTG 717 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GATGGCATTGACGATGGAATCGGACTTCCAGATTTGAGACTAACGCTATTCCTGGTCCTA 777 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 TCTTGGTCGCTCGTGTTCCTCACCCTCATAAAAGGTGTTAAAAGCTCCGGCAAAGCGTCC 837 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 TACTTCCTAGCGCTCTTCCCGTACGTCGTCATGGCGGTGCTGCTTGTCCGCGCTTGCACA 897 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 CTGCCGGGTGCAGTGGACGGTATCGTGTACTTCCTCAAGCCCCAGTGGGACAAAATCTAC 957 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GACCCGAAGGTGTGGTGCGCCGCCGTCACGCAGTGCTTCTTCTCGCTGTCGATCTGCTTC 1017 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GGCAACATCATCATGTACTCGTCGTACAACAAGTTCCGGCACAATGTGTACCGCGATGCG 1077 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 ACGATCGTGACGTCGATCGATACGTTCACGTCGCTGCTGGCCGGGTGTACAATCTTCGGC 1137 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 ATACTGGGACATCTGGCACACGTGACGGGGAAGACGGACGTGGGAAATGTGGTGAAATCC 1197 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GATGCGGGACTTGCATTTATTTCGTACCCGGAAGCGATCGCAAAGTTCGAGGTGCTGCCG 1257 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 CAAGCATTTTCGGTGCTGTTCTTCCTGATGCTGTTTGTGCTCGGCATCGGCAGCAATGTG 1317 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GCGATGACGTCGTGCGTGATGACGGTGATAAAGGATCAGTTCCCGCGGGTGCGCAACTGG 1377 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 CAGGCGGCCACGATTATTGCCATCTGTGGCGTGCTGCTCGGTAGCATCTACGTGACGCCG 1437 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GGCGGTCAGTGTGTGTTGAAGTTGGTGGATTATTACGGCGCCTCATCGATCGCGCTCGTG 1497 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 CTTGCCATTGCTGAGCTGATCGCGATCGGGTGGGTTTACGGCGTGGATCGACTGTGCAAG 1557 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 GACACGGAGTTTATGCTTGGCCATCGGCCCAACCTGTACTGGCGTCTGTGCTGGCGCTGG 1617 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 ATCACGCCCCTGCTAATGTTTGTCATTCTCATCTACAACCTTGTCACGCTCGAGCCGCTC 1677 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 ATGTACAGGCAGTACGTTTATCCTACGGTCGCTTACGGCATTGGTTGGTGCATTTTTGCC 1737 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 TTTGGGCTTCTGCAGCTTCCGATTTGGGCAGCCTACGCCGTCTACAAGCATAGCGGCAAA 1797 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 TCGCTGAACGAGAAAATTAAGAACGCCTTCAAACCGACCGCTGCCTGGGGTCCGATTGAT 1857 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 CCTGCCACGCATTACGAGTACAAAAAGTTCATCGA 1892 consensus_1889#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||