These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [AGATCGCCCGAGGTTCGCGCGTTAAGAGTATTAAACACGTAAATCGAGTGTNGCATGGTGTGGCAGAGAAAATAAACCACACATATATATACATAAACAATACCTTCATCTTCTGCAAGCAAAGACAAATATACTGAGTAGTTAGAACGATAAAGTTGTTAAATTGGCACGACGAAAGTGCGGTTGAGCCGGCGAAAAGCCATTCTTTGAACCAAATCATTACGATCATAGAGTGTATGTTAGGCGGAAAGGAAGTGCATACGCAGTAGTATTTATCTTCGAATCGTTTATCGCTTTTAGGTAAAGCGAATTTTCCGGCTTTAATCTGTTTCATCTTCACGATTGGCGCCATCGACAGGCAATGTAGGAAATGTTCACCTTCTTCACGCGTACGTTTCAAATATTCACCAATAGCAGCGCCTCAAAGCGGGTGGGTCGTTGCAAAGTAATTCAGNTATTCACGGGGCGTGGGAAAGTAGTAGAAAAGTTCACCATATTTAGTAGACNGTAAAACAATCCCAATTTAATGGGGTGGNCTTAGGCAGNGGTCCTCCTATCTAATNTGGTGGCCTGGCCAGTCCGGTCTTTTCCGTTGGACNANNTTTGCNNNATATANTGGTTCATCCGGGNAACAAGTGCCACTTACCACACGTANAGGAAAACAGAAACGAA] [+] EMBL AL694591 [AGATCGCCCGAGGTTCGCGCGTTAAGAGTATTAAACACGTAAATCGAGTGTNGCATGGTGTGGCAGAGAAAATAAACCACACATATATATACATAAACAATACCTTCATCTTCTGCAAGCAAAGACAAATATACTGAGTAGTTAGAACGATAAAGTTGTTAAATTGGCACGACGAAAGTGCGGTTGAGCCGGCGAAAAGCCATTCTTTGAACCAAATCATTACGATCATAGAGTGTATGTTAGGCGGAAAGGAAGTGCATACGCAGTAGTATTTATCTTCGAATCGTTTATCGCTTTTAGGTAAAGCGAATTTTCCGGCTTTAATCTGTTTCATCTTCACGATTGGCGCCATCGACAGGCAATGTAGGAAATGTTCACCTTCTTCACGCGTACGTTTCAAATATTCACCAATAGCAGCGCCTCAAAGCGGGTGGGTCGTTGCAAAGTAATTCAGNTATTCACGGGGCGTGGGAAAGTAGTAGAAAAGTTCACCATATTTAGTAGACNGTAAAACAATCCCAATTTAATGGGGTGGNCTTAGGCAGNGGTCCTCCTATCTAATNTGGTGGCCTGGCCAGTCCGGTCTTTTCCGTTGGACNANNTTTGCNNNATATANTGGTTCATCCGGGNAACAAGTGCCACTTACCACACGTANAGGAAAACAGAAACGAA] consensusID : consensus_1894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [GCAATGTAGAAATGTTCACCTTCTTCACGCGTACGTTTAAATATCACCAATAGCAGCGCATCAAAGCGGGTGGTCGTTGAAAGTAATTCAGTTTTCAAGGTTTGAGTGTGGGAAAGTAGTAGAAAAGTTCACCATTTTAGTAGAAAGTAACATCCATTTATGGTGCTTTGCAGCTCTCTTTATTGTGCTGGCAGTCGTCTTTCGTTGACATTGAATTATGTTATCGGAAAAGTGCATTACAAGTAGAGAAAACAGAACGATGGCACCGCGGTGAAGAGTCCCCGTACTGAGCAGGGGATAGGGACTGCAGAGCAAGAAACTTATAAATAAGCAACACGCTGGGAAAACGATTGCAAAGAGCGTGTGTACACATTCTTTATTAGTGGTACGAGATTAGAAGGATGAACGGAAGTTATAGAACGGAAGCAAAAACACAGAGAAAACGAGTGTGATGCTATATTTGTGGTAGCAATAAAGAACGAGATTGACAAA] [+] EMBL BX613234 [GCAATGTAGAAATGTTCACCTTCTTCACGCGTACGTTTAAATATCACCAATAGCAGCGCATCAAAGCGGGTGGTCGTTGAAAGTAATTCAGTTTTCAAGGTTTGAGTGTGGGAAAGTAGTAGAAAAGTTCACCATTTTAGTAGAAAGTAACATCCATTTATGGTGCTTTGCAGCTCTCTTTATTGTGCTGGCAGTCGTCTTTCGTTGACATTGAATTATGTTATCGGAAAAGTGCATTACAAGTAGAGAAAACAGAACGATGGCACCGCGGTGAAGAGTCCCCGTACTGAGCAGGGGATAGGGACTGCAGAGCAAGAAACTTATAAATAAGCAACACGCTGGGAAAACGATTGCAAAGAGCGTGTGTACACATTCTTTATTAGTGGTACGAGATTAGAAGGATGAACGGAAGTTATAGAACGGAAGCAAAAACACAGAGAAAACGAGTGTGATGCTATATTTGTGGTAGCAATAAAGAACGAGATTGACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1894#0 AGATCGCCCGAGGTTCGCGCGTTAAGAGTATTAAACACGTAAATCGAGTGTNGCATGGTG 60 consensus_1894#1 ------------------------------------------------------------ consensus_1894#0 TGGCAGAGAAAATAAACCACACATATATATACATAAACAATACCTTCATCTTCTGCAAGC 120 consensus_1894#1 ------------------------------------------------------------ consensus_1894#0 AAAGACAAATATACTGAGTAGTTAGAACGATAAAGTTGTTAAATTGGCACGACGAAAGTG 180 consensus_1894#1 ------------------------GCAATGTAGAAATGTTCACCT---TCTTCACGCGTA 33 * * ** * **** * * * * ** consensus_1894#0 CGGTTGAGC-CGGCGAAAAGCCATTCTTTGAACCAAATCATTACGATCATAGAGTGTATG 239 consensus_1894#1 CGTTTAAATATCACCAATAGCAGCGCATCAAAGCGGGT------GGTCGTTGAAAGTAAT 87 ** ** * * ** *** * * ** * * * ** * ** *** consensus_1894#0 TTAGGCGGAAAGGAAGTGCATACGCAGTAGTATTTATCTTCGAATCGTTTATCGCTTTTA 299 consensus_1894#1 TCAGTTTTCAAGGTT-TGAGTGTGGGAAAGTAGTA------GAAAAGTTCACCATTTT-- 138 * ** **** ** * * **** * *** *** * * *** consensus_1894#0 GGTAAAGCGAATTTTCCGGCTTTAATCTGTTTCATCTTCACGATTGGCGCCATCGACAGG 359 consensus_1894#1 AGTAGAAAGTAACATCCATTTATGGTGCTTTGCAGCTCTCTTTATTGTGCTGGCAGTCGT 198 *** * * * *** * * * ** ** ** * * ** * * consensus_1894#0 CAATGTAGGAAATGTTCACCTTCTTCACGCGTACGTTTCAAATATTCACCAATAGCAGCG 419 consensus_1894#1 C--TTTCGTTGACATTGAATTATGTTATCGGAAAAGTGCA-----TTACAAGTAGAGAAA 251 * * * * * ** * * * * * * * ** * ** * *** consensus_1894#0 CCTCAAAGCGGGTGGGTCGTTGCAAAGTAATTCAGNTATTCACGGGGCGTGGGAAAGTAG 479 consensus_1894#1 A--CAGAACGATGGCACCGCGGTGAAG-AGTCCCCGTACT----GAGCAGGGGATAGGGA 304 ** * ** * ** * *** * * * ** * * ** **** ** consensus_1894#0 TAGAAAAGTTCACCATATTTAGTAGACNGTAAAACAATCCCAATTTAATGG-GGTGGNCT 538 consensus_1894#1 CTGCAGAG--CAAGAAACTTATAAATAAGCAACACGCTGGGAAAACGATTGCAAAGAGCG 362 * * ** ** * * *** * * ** ** * ** ** * * * consensus_1894#0 TAGGCAGNGGTCCTCCTATCTAATNTGGTGGCCTGGCCAGTCCGGTCTTTTCCGTTGGAC 598 consensus_1894#1 TGTGTACACATTCTT-TATTAGTGGTACGAGATTAGAAGGATGAACGGAAGTTATAGAAC 421 * * * * ** *** * * * * * * * ** consensus_1894#0 NANNTTTGCNNNATATANTGGTTCATCCGGGNAACAAGTGCCACTTACCACACGTANAGG 658 consensus_1894#1 GGAAGCAAAAACACAGAGAAAACGAGTGTGATGCTATATTTGTGGTAGCA---ATAAAGA 478 * * * * * * * ** ** ** ** consensus_1894#0 AAAACAGAAACGAA 672 consensus_1894#1 ACGAGATTGACAAA 492 * * * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||