These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [CGTCAGTAGCGCTACTTCATTTACGGAGCGCTGATATTTTTTGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAACTACCACCGGCGGACGAGTAAGTGAAAAAGCACCAACTTCCATGCGGAATTGTGGATAGAATTTGGACGAAATGTACCAAGCTAAGCTGCCGATTGATTCCGACAGATTGATCTCTTCGCAGTGCCCAATCTCGGCAACAGCCACATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCGCACGCATCGATCCAATTGGAGCATCCGGTTCAGTACGTGATCGTTACGCACATCGGCCTGCGCTCCAAAAATTGCACCGGCATGCACGAATGTGCGAACAGGATGCGCATGCTACAGGATGCAGCCATCGGTGAGCGGAATCTGCCCGACATTCCAAGCAACTTTTATCTTGGTGGAGATGGCAACGTGTACGTGGGCCGTGGTTGGGATATTGCAAATTCGTATCACAATCGAACACTGTCCGTCTGCTTCATAGGAGACTTCCAAACCTACTAACCGAAAGAATCTCAATTCTCCGCCTTGCACCATCTCCTGACGTACGGTGTGATACAGCGAAAGCTTGCCAGCGACTATAAGCTTGTGGCACGAAGACAGACCAAACCTACCACAGCCAGCCCTGGCGACATGCTGTACGCTAGGCTG] [+] EMBL BX616457 [CGTCAGTAGCGCTACTTCATTTACGGAGCGCTGATATTTTTTGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAACTACCACCGGCGGACGAGTAAGTGAAAAAGCACCAACTTCCATGCGGAATTGTGGATAGAATTTGGACGAAATGTACCAAGCTAAGCTGCCGATTGATTCCGACAGATTGATCTCTTCGCAGTGCCCAATCTCGGCAACAGCCACATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCGCACGCATCGATCCAATTGGAGCATCCGGTTCAGTACGTGATCGTTACGCACATCGGCCTGCGCTCCAAAAATTGCACCGGCATGCACGAATGTGCGAACAGGATGCGCATGCTACAGGATGCAGCCATCGGTGAGCGGAATCTGCCCGACATTCCAAGCAACTTTTATCTTGGTGGAGATGGCAACGTGTACGTGGGCCGTGGTTGGGATATTGCAAATTCGTATCACAATCGAACACTGTCCGTCTGCTTCATAGGAGACTTCCAAACCTACTAACCGAAAGAATCTCAATTCTCCGCCTTGCACCATCTCCTGACGTACGGTGTGATACAGCGAAAGCTTGCCAGCGACTATAAGCTTGTGGCACGAAGACAGACCAAACCTACCACAGCCAGCCCTGGCGACATGCTGTACGCTAGGCTG] consensusID : consensus_1902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [GATCCCCGAGGTTATTTCAATTAAGAAATACATCTGCCCGTGAAATGTGATTTACTGTAGGAAGTATACCATACCCCGATAGGTTGACTTCCTTCTTTAAGAATCTTACAAAGAAGAGGACAAAAATGGTCTTTGGAAAAAGTGTGCGGCAATAAAATGTTTACCGACCGAGTGCATGCGTCACACATTCACAGCAATATTGACCTAAGACGTCAATGTGTGCAATGTGGCTTTACTTAAACCCGCCCTTTGCGACAATGGGCAATATGTTTGCGTCCGATGCACAATGGTGCGCTTTGAGTGTAGAGCTTGACTGAATTNTTATGACCTCGTCTTCCCATCGCACCTTTACCTTTCCTACAGCCGGCCGCAACAATCAGAACCGCGGACTACCTTCAGCGGAACCATCGACCCTGCGTCAGGAGCGCTACTTCATTTACGGAGCGCTGATATTTTTCGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAATACCACCGGCGGACGAATTGATCTCTTCGCAGTGCCCAATCTCGGCAAAGCCACAATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCCGCACGCATCGATCCAATTGGAGCAATCCGGGTTCAGTACGTGATCGTTACGCACATNCGGCTGCGCTCNAAAAATNGACCGGCATGCACGAA] [+] EMBL AL694626 [GATCCCCGAGGTTATTTCAATTAAGAAATACATCTGCCCGTGAAATGTGATTTACTGTAGGAAGTATACCATACCCCGATAGGTTGACTTCCTTCTTTAAGAATCTTACAAAGAAGAGGACAAAAATGGTCTTTGGAAAAAGTGTGCGGCAATAAAATGTTTACCGACCGAGTGCATGCGTCACACATTCACAGCAATATTGACCTAAGACGTCAATGTGTGCAATGTGGCTTTACTTAAACCCGCCCTTTGCGACAATGGGCAATATGTTTGCGTCCGATGCACAATGGTGCGCTTTGAGTGTAGAGCTTGACTGAATTNTTATGACCTCGTCTTCCCATCGCACCTTTACCTTTCCTACAGCCGGCCGCAACAATCAGAACCGCGGACTACCTTCAGCGGAACCATCGACCCTGCGTCAGGAGCGCTACTTCATTTACGGAGCGCTGATATTTTTCGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAATACCACCGGCGGACGAATTGATCTCTTCGCAGTGCCCAATCTCGGCAAAGCCACAATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCCGCACGCATCGATCCAATTGGAGCAATCCGGGTTCAGTACGTGATCGTTACGCACATNCGGCTGCGCTCNAAAAATNGACCGGCATGCACGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1902#0 CGTCAGTAGCGCTACTTCATTTACGGAGCGCTGATATTTTTTGCGATCGTCGGATTCTCA 60 consensus_1902#1 GATCCCCGAGGTTATTTCAATTAAGAAATAC--AT-CTGCCCGTGAAATGTGATTTACTG 57 ** * ** **** *** * * * ** * * ** * ** consensus_1902#0 ACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATA 120 consensus_1902#1 TAGGAAGTATACCATACCCCGA--TAGGTTGACTTCCTTCTTTAAGAATCTTACAAAGAA 115 * * *** * * ** **** * * * * * * consensus_1902#0 CTGTTCGACACCAACTACCACCGGCGGACGAGTAAGTGAAAAAGCACCAACTTCCATGCG 180 consensus_1902#1 GAG---GACAAAAATGGTCTTTGG--AAAAAGTGTGCGGCAATAAAATGTTTACCGACCG 170 * **** ** * ** * *** * * ** * * ** ** consensus_1902#0 GAATTGTGGATAGAATTTGGACGAAATGTACCAAGCTAAGCTGCCGATTGATTCCGACAG 240 consensus_1902#1 AGTGCATGCGTCACACATTCACAGCA-ATATTGACCTAAGACGTCAATGTGTGC---AAT 226 ** * * * ** * ** * ***** * * ** * * * consensus_1902#0 ATTGATCTCTTCGCAGTGCCCAATCTCGGCAACAGCCACATGATCATCGAACGGCGTAAC 300 consensus_1902#1 GTGGCTTTACTTAAACCCGCCCTTTGCGACAATGGGCAATATGTTTGCGTCCGATGCA-C 285 * * * * * * ** * ** *** * ** * ** ** * * * consensus_1902#0 TGGGGTTCGCAGCTAGATGCGCACGCATCGATCCAATTGGAGCATCCGGTTCAGTACGTG 360 consensus_1902#1 AATGGTGCGC--TTTGA-GTGTAGAGCTTGACTGAATTNTTATGACCTCGTCTTCCCATC 342 *** *** * ** * * * * ** **** ** ** * * consensus_1902#0 ATCGTTACGCACATCGGCCTGC--GCTCCAAAAATTGCACCGGCATGCACGAATGTGCGA 418 consensus_1902#1 GCACCTTTACCTTTCCTACAGCCGGCCGCAACAATCAGAACCGCGGACTACCTTCAGCGG 402 * * ** * ** ** *** *** * * ** * * *** consensus_1902#0 ACAGGATGCGCATGCTACAGGATGCAGCCATCGGTGAGCGGAATCTGCCCGACATTCCAA 478 consensus_1902#1 AACCATCGACCCTGCGTCAGGA-GCGCTACTTCATTTACGGAGC---GCTGATATTTTTC 458 * * * *** ***** ** * * **** * ** *** consensus_1902#0 GCAACTTTTATCTTGGTGGA-GATGGCAACGTGTACGTGGGCCGTGGTTGGGATATTGCA 537 consensus_1902#1 GCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCT 518 ** * * ** * * ** * **** ** * * * * ** consensus_1902#0 AATTCGTATCACAATCGAACACTGTCCGTCTGCTTCATAGG-AGACTTCCAAACCTACTA 596 consensus_1902#1 GACATTGACCGGGAGATACTGTTCGACACCAATACCACCGGCGGACGAATTGATCTCTTC 578 * * * * * * * * ** ** *** * ** * consensus_1902#0 ACCGAAAG-AATCTCAATTCTCCGCCTTGCACCATCTCCTGACGTA-CGGTGTGATACAG 654 consensus_1902#1 GCAGTGCCCAATCTCGGCAAAGCCACAATGATCATCGAACGGCGTAACTGGGGTTCGCAG 638 * * ****** * * * **** * **** * * * *** consensus_1902#0 CGAAAGCTTGCCAGCGACTATAAGCTTGTGGCA---CGAAGACAG-ACCAAACC--TAC- 707 consensus_1902#1 CTAGATGCCGCACGCATCGATCCAATTGGAGCAATCCGGGTTCAGTACGTGATCGTTACG 698 * * * ** ** * ** *** *** ** *** ** * * *** consensus_1902#0 CACAGCCAGCCCTGG-CGACATGCTGTACGCTAGGCTG--- 744 consensus_1902#1 CACATNCGGCTGCGCTCNAAAAATNGACCGGCATGCACGAA 739 **** * ** * * * * * ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||