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Anopheles gambiae
cluster # 1905 cluster # 1905       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1905#0 length = 503 sequences # 1  
consensus_1905#1 length = 212 sequences # 1  

consensusID : consensus_1905#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence
                              [CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGCACCGTCTGCTGCCACGAGCGAGC]

[+] EMBL BM611536             [CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGCACCGTCTGCTGCCACGAGCGAGC]


>consensus_1905#0 CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAAC ACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACT GTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAAC AACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGT AACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTG CTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAG TCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGC TGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGC ACCGTCTGCTGCCACGAGCGAGC



consensusID : consensus_1905#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence
                              [GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAGCCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACAT]

[+] EMBL BM603752             [GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAGCCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACAT]


>consensus_1905#1 GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAG CCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA CTGTGGAAGCTGAAGGTTTGGCCGACCGACAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1905#0      ------------------------------------------------------------
consensus_1905#1      GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAG 60
                                                                                  

consensus_1905#0      -CCGCCCACGC-GTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA 58
consensus_1905#1      CCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA 120
                       ***     ** * *  *******************************************

consensus_1905#0      ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA 118
consensus_1905#1      ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA 180
                      ************************************************************

consensus_1905#0      CTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACA 178
consensus_1905#1      CTGTGGAAGCTGAAGGTTTGGCCGACCGACAT---------------------------- 212
                      ********************************                            

consensus_1905#0      ACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCA 238
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      GTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCAT 298
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      TGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATAC 358
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      AGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTT 418
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      GCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAG 478
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      GCACCGTCTGCTGCCACGAGCGAGC 503
consensus_1905#1      -------------------------
                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)