These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGGCAGTTTAGAAAGCGACATGAATCGTTGCTGGCAATGGTGTGCCGTGTTGGTGTTGGTCTATGCTGCCCACTGCCAGGGCTACATCACGACGGGCATGCCGACGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCGTCGCCCCCACCGTACAACGGTACCGAGCAGGAGCCGGGCGACGAGCTCAAGTTCCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCACACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCGGGCGGCCGACTCGTACCGCCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGCTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGTCGTGACGATGCTGCACTACGATCTGCCCCAGTACCTGCA] [+] EMBL BM622616 [CCGGCAGTTTAGAAAGCGACATGAATCGTTGCTGGCAATGGTGTGCCGTGTTGGTGTTGGTCTATGCTGCCCACTGCCAGGGCTACATCACGACGGGCATGCCGACGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCGTCGCCCCCACCGTACAACGGTACCGAGCAGGAGCCGGGCGACGAGCTCAAGTTCCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCACACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCGGGCGGCCGACTCGTACCGCCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGCTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGTCGTGACGATGCTGCACTACGATCTGCCCCAGTACCTGCA] consensusID : consensus_1916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [GAATCGCCCGAGGTTATGCTGGCAAATGGTGTGTCGTGTTGGTGTTGGTTTATGCTGCCCACTGCCAGGCTACATCACGACGGGCATGCCGATGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCTGTCTGCCCCCACCTGTACAACGGTACCTGATGCAGGAGCCTGGGCGACGAGCTCAAGTTTCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACTGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCAACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCTGGGCGGCCGACTCGTACCGCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGT] [+] EMBL AL694699 [GAATCGCCCGAGGTTATGCTGGCAAATGGTGTGTCGTGTTGGTGTTGGTTTATGCTGCCCACTGCCAGGCTACATCACGACGGGCATGCCGATGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCTGTCTGCCCCCACCTGTACAACGGTACCTGATGCAGGAGCCTGGGCGACGAGCTCAAGTTTCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACTGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCAACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCTGGGCGGCCGACTCGTACCGCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1916#0 CCGGCAGTTTAGAAAGCGACATGAATCGTTGCTGGCAA-TGGTGTGCCGTGTTGGTGTTG 59 consensus_1916#1 -------------GAATCGCCCGAGGTTATGCTGGCAAATGGTGTGTCGTGTTGGTGTTG 47 * * ** ********* ******* ************* consensus_1916#0 GTCTATGCTGCCCACTGCCAGGGCTACATCACGACGGGCATGCCGACGCTGATTGAGCGG 119 consensus_1916#1 GTTTATGCTGCCCACTGCCAGG-CTACATCACGACGGGCATGCCGATGCTGATTGAGCGG 106 ** ******************* *********************** ************* consensus_1916#0 GACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCC- 178 consensus_1916#1 GACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCT 166 *********************************************************** consensus_1916#0 GTC-GCCCCCACC-GTACAACGGTACCGA--GCAGGAGCC-GGGCGACGAGCTCAAGTTC 233 consensus_1916#1 GTCTGCCCCCACCTGTACAACGGTACCTGATGCAGGAGCCTGGGCGACGAGCTCAAGTTT 226 *** ********* ************* ********* ****************** consensus_1916#0 CCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAAC 293 consensus_1916#1 CCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAAC 286 ************************************************************ consensus_1916#0 GTGGAC-GGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCACACCCATCCGGAGCTGGT 352 consensus_1916#1 GTGGACTGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCA-ACCCATCCGGAGCTGGT 345 ****** *********************************** ***************** consensus_1916#0 AGTGGACGGGGCCACCGGTGACC-GGGCGGCCGACTCGTACCGCCTCTACAGAAGCGACG 411 consensus_1916#1 AGTGGACGGGGCCACCGGTGACCTGGGCGGCCGACTCGTACCGC-TCTACAGAAGCGACG 404 *********************** ******************** *************** consensus_1916#0 TCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGCTTCTCGATCGCCTGGTCCCGGC 471 consensus_1916#1 TCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCG-TTCTCGATCGCCTGGTCCCGGC 463 ************************************* ********************** consensus_1916#0 TGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGC 531 consensus_1916#1 TGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGC 523 ************************************************************ consensus_1916#0 TAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGTCGTGACGATGCTGCACTACGATC 591 consensus_1916#1 TAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGT----------------------- 560 ************************************* consensus_1916#0 TGCCCCAGTACCTGCA 607 consensus_1916#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||