These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [AATNCCCCGAGGTTAACAGAAGTGAGATAAGGCAGCCTCGCACATGAACAATCTTTCCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACGGTGCAGGAGCTGGTACACCTCCCATACCGGAAACAGGCGGCGTGGTAGTTAATGTTACAAACCCTTCGACAGCATACGCGATACCATGAGCAGTAAAGCAACTTTAGCAAATCAGTTGCGCATACTTTAGGAAACGGATTTTTTTCCAAGGCAATGTTATGATACGAATTGTTAACGATAAGTTTTTGAAATGTTACCTAATTTTCANAGGAATTTTCAAGGAGCTAGATATACGTTACAATCAGTTCATCGCGTTTCTCGGAATAATTAGAGCAGATACATTTTTTTATCTGCGAAGTAAGCAAAGTAGATATAGACATGGGTCCAAAAGTCTCTTACCTCTTACCGGTGAGGTGCGGCACGGTCTAACTAGATTAAGGAGATTAATGACGAAACTGACACGGAATGGAATTTCGGCTTGCAGTGATAAGGTGACGGTTTTCTCTAATCGTCAGACATTTTTATCAGTGTCACTGCTTGCNATAGGAGATTGAGGGACATTAAAAAAACATCGCATACGCAATTCGTCCTAAGATTNTGAGGATCACCGGTAGATCACTG] [+] EMBL AL933185 [AATNCCCCGAGGTTAACAGAAGTGAGATAAGGCAGCCTCGCACATGAACAATCTTTCCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACGGTGCAGGAGCTGGTACACCTCCCATACCGGAAACAGGCGGCGTGGTAGTTAATGTTACAAACCCTTCGACAGCATACGCGATACCATGAGCAGTAAAGCAACTTTAGCAAATCAGTTGCGCATACTTTAGGAAACGGATTTTTTTCCAAGGCAATGTTATGATACGAATTGTTAACGATAAGTTTTTGAAATGTTACCTAATTTTCANAGGAATTTTCAAGGAGCTAGATATACGTTACAATCAGTTCATCGCGTTTCTCGGAATAATTAGAGCAGATACATTTTTTTATCTGCGAAGTAAGCAAAGTAGATATAGACATGGGTCCAAAAGTCTCTTACCTCTTACCGGTGAGGTGCGGCACGGTCTAACTAGATTAAGGAGATTAATGACGAAACTGACACGGAATGGAATTTCGGCTTGCAGTGATAAGGTGACGGTTTTCTCTAATCGTCAGACATTTTTATCAGTGTCACTGCTTGCNATAGGAGATTGAGGGACATTAAAAAAACATCGCATACGCAATTCGTCCTAAGATTNTGAGGATCACCGGTAGATCACTG] consensusID : consensus_1920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [CCCCGGAGATATGTGACCAGGAAAAGGGACAACTTCAACTGCAGAAAAGTGAAGAGTCGGACCAGCGTGAACCCACCAACAAACAAATTAATGCAGAGCTGAGCAGCTTCGTGCAGAAGAAATCGTTCGCCCAGAACATGATGGACATTGCCCTGCTGTCGGCAAACACGAATCAGCTGCGGTACGTAATCGATCTGGGGGACAAGCATCCATACTACATGACCAGTCTGATGCTGATCATCGTCAGTCTCGTGATGCAGGTAGTCGTNGGCCTATCGATGCTGTACGTGAATAGATACAACATGAAGAACAGAAGTGAGATAAAGGCAGCCTCGCACATGAACAATCTNTNCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACNGTGCAGGAGCT] [+] EMBL BX624228 [CCCCGGAGATATGTGACCAGGAAAAGGGACAACTTCAACTGCAGAAAAGTGAAGAGTCGGACCAGCGTGAACCCACCAACAAACAAATTAATGCAGAGCTGAGCAGCTTCGTGCAGAAGAAATCGTTCGCCCAGAACATGATGGACATTGCCCTGCTGTCGGCAAACACGAATCAGCTGCGGTACGTAATCGATCTGGGGGACAAGCATCCATACTACATGACCAGTCTGATGCTGATCATCGTCAGTCTCGTGATGCAGGTAGTCGTNGGCCTATCGATGCTGTACGTGAATAGATACAACATGAAGAACAGAAGTGAGATAAAGGCAGCCTCGCACATGAACAATCTNTNCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACNGTGCAGGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1920#0 AATNCCCCGAGGTTAACAGAAGTGAGATAAGGCAGCCTCGCACATGAACAATCTTTCCGT 60 consensus_1920#1 ------------------CCCCGGAGATATG-TGACCAGGAAAAGGGACAAC--TTCAAC 39 ****** * ** * * * * **** *** consensus_1920#0 GGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAA--CGGTGCA 118 consensus_1920#1 TGCAGAAAAGTGAAGAGT----CGGACCAGCGTGAACCCACCAACAAACAAATTAATGCA 95 ** * ** * ** * * ** **** * * * ** *** **** consensus_1920#0 GGAGCTGGTACACCTCCCATACCGGAAACAGGCGGCGTGGTAGTTAATGT-TACAAACCC 177 consensus_1920#1 G-AGCTGAGCAGCTTCGTGCAGAAGAAATCGTTCGCCCAGAACATGATGGACATTGCCCT 154 * ***** * ** * **** * ** * * * *** * ** consensus_1920#0 TTCGACAGCATACGCGATACCATGAGCAGTA---AAGCAACTTTAGCAAATCAGTTGCGC 234 consensus_1920#1 GCTGTCGGCAAACACGA-ATCAGCTGCGGTACGTAATCGATCTGGGGGA--CAAGCATCC 211 * * *** ** *** * ** ** *** ** * * * * * ** * consensus_1920#0 ATACTTTAGGA---AACGGATTTTTTTCCAAGGCAATGTTATGATACGAATTGTTAACGA 291 consensus_1920#1 ATACTACATGACCAGTCTGATGCTGATCATCGTCAGTCTCGTGATGCAGGTAGT---CGT 268 ***** * ** * *** * ** * ** * * **** * * ** ** consensus_1920#0 TAAGTTTTTGAAATGTTACCTAATTTTCANAGGAATTTTCAAGGAGCTAGATATACGTTA 351 consensus_1920#1 NGGCCTATCGATGCTGTACGTGAAT---AGATACAACATGAAGAA--CAGAAGTGAGATA 323 * * ** *** * * * * * * * *** * *** * * ** consensus_1920#0 CAATCAGTTCATCGCGTTTCTCGGAATAATTAGAGCA-GATACATTTTTTTATCTGCGAA 410 consensus_1920#1 AAGGCAGCCTCGCACAT------GAACAATCTNTNCGTGGCGGGTGTGTTTATGGTAACG 377 * *** * * * *** *** * * * * ***** consensus_1920#0 GTAAGCAAAGTAGATATAGACATGGGTCCAAAAGTCTCTTACCTCTTACCGGTGAGGTGC 470 consensus_1920#1 CTGGTCAACGTGTTCAT--ATCTACCTTCAACNGTGCAGGAGCT---------------- 419 * *** ** ** * * * *** ** * ** consensus_1920#0 GGCACGGTCTAACTAGATTAAGGAGATTAATGACGAAACTGACACGGAATGGAATTTCGG 530 consensus_1920#1 ------------------------------------------------------------ consensus_1920#0 CTTGCAGTGATAAGGTGACGGTTTTCTCTAATCGTCAGACATTTTTATCAGTGTCACTGC 590 consensus_1920#1 ------------------------------------------------------------ consensus_1920#0 TTGCNATAGGAGATTGAGGGACATTAAAAAAACATCGCATACGCAATTCGTCCTAAGATT 650 consensus_1920#1 ------------------------------------------------------------ consensus_1920#0 NTGAGGATCACCGGTAGATCACTG 674 consensus_1920#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||