These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGGGTTACCAGAACGATAAGGAATCGGCAAACGATGGGCGCTGGGTGGCAACACCGCTCACCGAAGACCACAAACCGGAAAGCTACGCAGAAAAGATGCGTATTATGAGTTGTGGCGGTAAGGTAGTTACCAAATCGGGCGTGCCAC] [+] EMBL BM582581 [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGGGTTACCAGAACGATAAGGAATCGGCAAACGATGGGCGCTGGGTGGCAACACCGCTCACCGAAGACCACAAACCGGAAAGCTACGCAGAAAAGATGCGTATTATGAGTTGTGGCGGTAAGGTAGTTACCAAATCGGGCGTGCCAC] consensusID : consensus_1924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [CCGGATCGATTCAGCTGCATCGTCGTTGTTTGTTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGG] [+] EMBL BM630689 [CCGGATCGATTCAGCTGCATCGTCGTTGTTTGTTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1924#0 ------CCGCCCACGCGTCCGCCCACGCGTCCGTCTGTTTTCTATTTTTGTGTACGCGAG 54 consensus_1924#1 CCGGATCGATTCAGCTGCATCGTCGTTGTTTGTTCTGTTTTCTATTTTTGTGTACGCGAG 60 * ** * * * *************************** consensus_1924#0 AAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGG 114 consensus_1924#1 AAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGG 120 ************************************************************ consensus_1924#0 GGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTA 174 consensus_1924#1 GGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTA 180 ************************************************************ consensus_1924#0 CTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGG 234 consensus_1924#1 CTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGG 240 ************************************************************ consensus_1924#0 AATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAA 294 consensus_1924#1 AATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAA 300 ************************************************************ consensus_1924#0 TACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAAT 354 consensus_1924#1 TACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAAT 360 ************************************************************ consensus_1924#0 ACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAA 414 consensus_1924#1 ACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAA 420 ************************************************************ consensus_1924#0 AACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACG 474 consensus_1924#1 AACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACG 480 ************************************************************ consensus_1924#0 GGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGGGTTACCAGAACGA 534 consensus_1924#1 GGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGG------------- 527 *********************************************** consensus_1924#0 TAAGGAATCGGCAAACGATGGGCGCTGGGTGGCAACACCGCTCACCGAAGACCACAAACC 594 consensus_1924#1 ------------------------------------------------------------ consensus_1924#0 GGAAAGCTACGCAGAAAAGATGCGTATTATGAGTTGTGGCGGTAAGGTAGTTACCAAATC 654 consensus_1924#1 ------------------------------------------------------------ consensus_1924#0 GGGCGTGCCAC 665 consensus_1924#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||