These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCGCTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCGCAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCACGTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAAAGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACACAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATAAACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAACAGTAAGTGTGCNATGTTTCAATCTTTAATCANAATGANNACACCNCACAATCACTNATAGTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAAAACAGTAGCCAACTGGCACCAGCTAATCGCGCACGATCGGATTGTTTGGTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGA] [+] EMBL AL694777 [ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCGCTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCGCAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCACGTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAAAGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACACAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATAAACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAACAGTAAGTGTGCNATGTTTCAATCTTTAATCANAATGANNACACCNCACAATCACTNATAGTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAAAACAGTAGCCAACTGGCACCAGCTAATCGCGCACGATCGGATTGTTTGGTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGA] consensusID : consensus_1930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CCGATATAAACAAACAAAACAGAAAAGGGAAGAAAGACGTAAGCAAACAAACAAACAAACAACAGTAAGTGTGCATGTTTAATCTTTAATAAATGAAAACAAAATACTATAGTAGTAGACAGCGAAGGGCGAAAGAGAAACTTGTTAAACGAAATGCAAAACAAAACAGTAGCCAACTGCACCAGCTAATCGCGCAGGATCGGATTGTTTGCTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGGGCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGCCCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTGCTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGACAATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT] [+] EMBL BM628220 [CCGATATAAACAAACAAAACAGAAAAGGGAAGAAAGACGTAAGCAAACAAACAAACAAACAACAGTAAGTGTGCATGTTTAATCTTTAATAAATGAAAACAAAATACTATAGTAGTAGACAGCGAAGGGCGAAAGAGAAACTTGTTAAACGAAATGCAAAACAAAACAGTAGCCAACTGCACCAGCTAATCGCGCAGGATCGGATTGTTTGCTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGGGCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGCCCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTGCTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGACAATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1930#0 ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCG 60 consensus_1930#1 ------------------------------------------------------------ consensus_1930#0 CTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCG 120 consensus_1930#1 --------------CCGATATAAACAAACAAAA---CAGAAAAGGGAAGAAAGACGTAAG 43 * * ******* * * ** *** * * * **** * consensus_1930#0 CAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCAC 180 consensus_1930#1 CAAACAAACAAACAAACA---ACAGTAAGTGT--GCATGTTTAATCTTTAATAAATGAAA 98 *** * * * *** * ** * *** * * * * * * * * consensus_1930#0 GTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAA 240 consensus_1930#1 ACAAAATACTATAGTAG-TAGACAGCGAAGGGCGAAAGAG-AAACT--TGTTAAACGAAA 154 * **** * **** ** * * *** **** *** *** *** consensus_1930#0 AGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACA 300 consensus_1930#1 TGCAAAACAAA-ACAGTAGCCAACTGCAC------CAGCTAATCGCGCAGGATCGGATTG 207 * *** *** * * * ** ***** ** * ** ** * * consensus_1930#0 CAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATA 360 consensus_1930#1 TTTGCTC---------CGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCT 258 * * * * *** * ***** * * ** * ** * consensus_1930#0 AACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAAC 420 consensus_1930#1 CATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGG 318 * * * **** ** * ** * * * *** * ** consensus_1930#0 AGTAAGTGTGCNATGTTTCAATCTTTA-ATCANAATGANNACACCNCACAATCACTNATA 479 consensus_1930#1 GCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGC 378 *** * * ** * * *** * * * *** *** ** * consensus_1930#0 GTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAA 539 consensus_1930#1 CCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTG 438 ** * * * ** * * * * * * * consensus_1930#0 AACAGTAGCCAACTGGCACCAGC-TAATCGCGCACGATCGGATTGTTTGGTCCGAATCGC 598 consensus_1930#1 CTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGAC 498 ** ** * ** **** * * * ** * * * consensus_1930#0 ATGCTGGAGCAGTGTATGA----AACTAAATGTGCGATCTCATCGTTAGAGCAGA 649 consensus_1930#1 AATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT------ 547 * * * * ** * ** *** * * *** * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||