Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1930 cluster # 1930       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1930#0 length = 649 sequences # 1  
consensus_1930#1 length = 547 sequences # 1  

consensusID : consensus_1930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence
                              [ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCGCTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCGCAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCACGTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAAAGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACACAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATAAACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAACAGTAAGTGTGCNATGTTTCAATCTTTAATCANAATGANNACACCNCACAATCACTNATAGTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAAAACAGTAGCCAACTGGCACCAGCTAATCGCGCACGATCGGATTGTTTGGTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGA]

[+] EMBL AL694777             [ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCGCTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCGCAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCACGTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAAAGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACACAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATAAACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAACAGTAAGTGTGCNATGTTTCAATCTTTAATCANAATGANNACACCNCACAATCACTNATAGTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAAAACAGTAGCCAACTGGCACCAGCTAATCGCGCACGATCGGATTGTTTGGTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGA]


>consensus_1930#0 ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCG CTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCG CAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCAC GTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAA AGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACA CAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATA AACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAAC AGTAAGTGTGCNATGTTTCAATCTTTAATCANAATGANNACACCNCACAATCACTNATAG TCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAAA ACAGTAGCCAACTGGCACCAGCTAATCGCGCACGATCGGATTGTTTGGTCCGAATCGCAT GCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGA



consensusID : consensus_1930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence
                              [CCGATATAAACAAACAAAACAGAAAAGGGAAGAAAGACGTAAGCAAACAAACAAACAAACAACAGTAAGTGTGCATGTTTAATCTTTAATAAATGAAAACAAAATACTATAGTAGTAGACAGCGAAGGGCGAAAGAGAAACTTGTTAAACGAAATGCAAAACAAAACAGTAGCCAACTGCACCAGCTAATCGCGCAGGATCGGATTGTTTGCTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGGGCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGCCCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTGCTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGACAATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT]

[+] EMBL BM628220             [CCGATATAAACAAACAAAACAGAAAAGGGAAGAAAGACGTAAGCAAACAAACAAACAAACAACAGTAAGTGTGCATGTTTAATCTTTAATAAATGAAAACAAAATACTATAGTAGTAGACAGCGAAGGGCGAAAGAGAAACTTGTTAAACGAAATGCAAAACAAAACAGTAGCCAACTGCACCAGCTAATCGCGCAGGATCGGATTGTTTGCTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGGGCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGCCCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTGCTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGACAATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT]


>consensus_1930#1 CCGATATAAACAAACAAAACAGAAAAGGGAAGAAAGACGTAAGCAAACAAACAAACAAAC AACAGTAAGTGTGCATGTTTAATCTTTAATAAATGAAAACAAAATACTATAGTAGTAGAC AGCGAAGGGCGAAAGAGAAACTTGTTAAACGAAATGCAAAACAAAACAGTAGCCAACTGC ACCAGCTAATCGCGCAGGATCGGATTGTTTGCTCCGAATCGCATGCTGGAGCAGTGTATG AAACTAAATGTGCGATCTCATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCC ACATTTTTCGGAGACAGGGCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAAT ACCCCACCATTAGGCGGCCCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTAT TCGTTAGTAGACCGGCTGCTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGG TTATCCCAGTCTCCAGACAATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCAC TACTTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1930#0      ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCG 60
consensus_1930#1      ------------------------------------------------------------
                                                                                  

consensus_1930#0      CTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCG 120
consensus_1930#1      --------------CCGATATAAACAAACAAAA---CAGAAAAGGGAAGAAAGACGTAAG 43
                                    *   *  ******* * *    ** ***   * * * ****    *

consensus_1930#0      CAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCAC 180
consensus_1930#1      CAAACAAACAAACAAACA---ACAGTAAGTGT--GCATGTTTAATCTTTAATAAATGAAA 98
                      *** *  * *  ***      * **  * ***  * * *        * *  *  *  * 

consensus_1930#0      GTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAA 240
consensus_1930#1      ACAAAATACTATAGTAG-TAGACAGCGAAGGGCGAAAGAG-AAACT--TGTTAAACGAAA 154
                          *    **** *   ****     **  * *  ***  ****   *** ***  ***

consensus_1930#0      AGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACA 300
consensus_1930#1      TGCAAAACAAA-ACAGTAGCCAACTGCAC------CAGCTAATCGCGCAGGATCGGATTG 207
                       * ***  *** * *  *  **  *****      **    *  **     ** * *   

consensus_1930#0      CAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATA 360
consensus_1930#1      TTTGCTC---------CGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCT 258
                          *           * * * ***   *  ***** * * ** *  **     *     

consensus_1930#0      AACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAAC 420
consensus_1930#1      CATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGG 318
                       *     * * ****  **         *  **  * * *  ***        *  **  

consensus_1930#0      AGTAAGTGTGCNATGTTTCAATCTTTA-ATCANAATGANNACACCNCACAATCACTNATA 479
consensus_1930#1      GCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGC 378
                           *** *   * **    *    * ***  *   *  * *** *** ** *      

consensus_1930#0      GTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAA 539
consensus_1930#1      CCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTG 438
                        **            *  *  * **        * *  *   *   *   *     *  

consensus_1930#0      AACAGTAGCCAACTGGCACCAGC-TAATCGCGCACGATCGGATTGTTTGGTCCGAATCGC 598
consensus_1930#1      CTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGAC 498
                          **        **   * ** ****     *    * * ** *      *      *

consensus_1930#0      ATGCTGGAGCAGTGTATGA----AACTAAATGTGCGATCTCATCGTTAGAGCAGA 649
consensus_1930#1      AATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT------ 547
                      *    * * *  ** * **    *** *  * *** * *   *  ***       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)