These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATCGTACACTGTTGATCGATATGCTGGAACTGGCATTTCATCAATTTCGCATAAATGCGATAGAAG] [+] EMBL BM620821 [CCGCCCACGCGTCCGCCCACGCGTCCGGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATCGTACACTGTTGATCGATATGCTGGAACTGGCATTTCATCAATTTCGCATAAATGCGATAGAAG] consensusID : consensus_1932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGCAAATTTTCAAGAATAAGATTAACAACTGTAAAGTTATTGAAGTGATTGTAGATAATGTTTGACTGTAAACCATCGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATC] [+] EMBL BM603341 [CCGCAAATTTTCAAGAATAAGATTAACAACTGTAAAGTTATTGAAGTGATTGTAGATAATGTTTGACTGTAAACCATCGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1932#0 -------------------------------------------------CCGCCCACG-C 10 consensus_1932#1 CCGCAAATTTTCAAGAATAAGATTAACAACTGTAAAGTTATTGAAGTGATTGTAGATAAT 60 * * consensus_1932#0 GTCCGCCCACGCGTC-CGGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCT 69 consensus_1932#1 GTTTGACTGTAAACCATCGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCT 120 ** * * * ****************************************** consensus_1932#0 AGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAAT 129 consensus_1932#1 AGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAAT 180 ************************************************************ consensus_1932#0 CTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGC 189 consensus_1932#1 CTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGC 240 ************************************************************ consensus_1932#0 AAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGAT 249 consensus_1932#1 AAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGAT 300 ************************************************************ consensus_1932#0 ACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCA 309 consensus_1932#1 ACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCA 360 ************************************************************ consensus_1932#0 GGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGA 369 consensus_1932#1 GGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGA 420 ************************************************************ consensus_1932#0 GCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAAT 429 consensus_1932#1 GCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAAT 480 ************************************************************ consensus_1932#0 CTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGA 489 consensus_1932#1 CTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGA 540 ************************************************************ consensus_1932#0 ATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCAT 549 consensus_1932#1 ATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCAT 600 ************************************************************ consensus_1932#0 AACTTTTGAAAGACTTTATCGTACACTGTTGATCGATATGCTGGAACTGGCATTTCATCA 609 consensus_1932#1 AACTTTTGAAAGACTTTATC---------------------------------------- 620 ******************** consensus_1932#0 ATTTCGCATAAATGCGATAGAAG 632 consensus_1932#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||