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Anopheles gambiae
cluster # 1934 cluster # 1934       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1934#0 length = 1052 sequences # 1  
consensus_1934#1 length = 596 sequences # 1  

consensusID : consensus_1934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1052
fasta sequence
                              [GAGGTTTACACTCATCCAATTTGGTGCCTCCGGTTAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTACACACTGGATATTTGGTTCTCGGTATCTNGGCTTTCACGCAAGCGGCACTGAGCGCTTTTCACTTCTAAATGTNTCNCTCGAACACTNNNGCAATACTGACTCTTAGCCAGGNNAAACTATCGGCGACTTCCGCTCCAGCACACTTCTCCCCATCTNTTCTTCACTTCTCCTTCCTACCTACANGGCTCTGCTTGCTTGGGCGCCAGCCTCTNTCACACACGCACNTNCACCACTCTCCACACGCTCTGCTCACTGCTNNNGGCGGACTGCGTTGCCTCCCCCCGCTCTCCCCCCTTTTCTGCTGCGTCCCANCACACTGCTTGCACANCNCCTACTGCCCTCTACTCCATTCNACCCTCACTACTACTCTCCCGCGCACACGCGNCANAACCTCNCNAACGCACGGNTACNACAGGNCCCCTANACCCCTGGCCCCACATCNGGGGCATCTNCAAGGCNAACCAACCCCAACCCGCCCCGAGGGCTNGGTCAACCNAGACTACAGACAANTCAAGCANNANGGAGGCACCCAAACNCGGACCCGNANCCACCCGCCCCTCTACCGNCACACTGGCGACCACACCNTGGGCTGGCCAACCCCAATCACCACACACCCAGGCACACGGCGATCCCGGCTCCAGNCAGTNAGGACCTCNGGACCCCCCTATCNCGCCACCTACGNGGCACTCCCTCGGCCGTAACCACCCACANAAATAATAGCAAACACGGCACACATCACGN]

[+] EMBL AL694795             [GAGGTTTACACTCATCCAATTTGGTGCCTCCGGTTAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTACACACTGGATATTTGGTTCTCGGTATCTNGGCTTTCACGCAAGCGGCACTGAGCGCTTTTCACTTCTAAATGTNTCNCTCGAACACTNNNGCAATACTGACTCTTAGCCAGGNNAAACTATCGGCGACTTCCGCTCCAGCACACTTCTCCCCATCTNTTCTTCACTTCTCCTTCCTACCTACANGGCTCTGCTTGCTTGGGCGCCAGCCTCTNTCACACACGCACNTNCACCACTCTCCACACGCTCTGCTCACTGCTNNNGGCGGACTGCGTTGCCTCCCCCCGCTCTCCCCCCTTTTCTGCTGCGTCCCANCACACTGCTTGCACANCNCCTACTGCCCTCTACTCCATTCNACCCTCACTACTACTCTCCCGCGCACACGCGNCANAACCTCNCNAACGCACGGNTACNACAGGNCCCCTANACCCCTGGCCCCACATCNGGGGCATCTNCAAGGCNAACCAACCCCAACCCGCCCCGAGGGCTNGGTCAACCNAGACTACAGACAANTCAAGCANNANGGAGGCACCCAAACNCGGACCCGNANCCACCCGCCCCTCTACCGNCACACTGGCGACCACACCNTGGGCTGGCCAACCCCAATCACCACACACCCAGGCACACGGCGATCCCGGCTCCAGNCAGTNAGGACCTCNGGACCCCCCTATCNCGCCACCTACGNGGCACTCCCTCGGCCGTAACCACCCACANAAATAATAGCAAACACGGCACACATCACGN]


>consensus_1934#0 GAGGTTTACACTCATCCAATTTGGTGCCTCCGGTTAGACATTGTAGCGGGATATAATTGT ATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGG GAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATA GTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCAT TGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCT TCTACTTTTACACACTGGATATTTGGTTCTCGGTATCTNGGCTTTCACGCAAGCGGCACT GAGCGCTTTTCACTTCTAAATGTNTCNCTCGAACACTNNNGCAATACTGACTCTTAGCCA GGNNAAACTATCGGCGACTTCCGCTCCAGCACACTTCTCCCCATCTNTTCTTCACTTCTC CTTCCTACCTACANGGCTCTGCTTGCTTGGGCGCCAGCCTCTNTCACACACGCACNTNCA CCACTCTCCACACGCTCTGCTCACTGCTNNNGGCGGACTGCGTTGCCTCCCCCCGCTCTC CCCCCTTTTCTGCTGCGTCCCANCACACTGCTTGCACANCNCCTACTGCCCTCTACTCCA TTCNACCCTCACTACTACTCTCCCGCGCACACGCGNCANAACCTCNCNAACGCACGGNTA CNACAGGNCCCCTANACCCCTGGCCCCACATCNGGGGCATCTNCAAGGCNAACCAACCCC AACCCGCCCCGAGGGCTNGGTCAACCNAGACTACAGACAANTCAAGCANNANGGAGGCAC CCAAACNCGGACCCGNANCCACCCGCCCCTCTACCGNCACACTGGCGACCACACCNTGGG CTGGCCAACCCCAATCACCACACACCCAGGCACACGGCGATCCCGGCTCCAGNCAGTNAG GACCTCNGGACCCCCCTATCNCGCCACCTACGNGGCACTCCCTCGGCCGTAACCACCCAC ANAAATAATAGCAAACACGGCACACATCACGN



consensusID : consensus_1934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence
                              [TCTTGTTTCACACATTCTTAGCTTTTGTTTTTATTACTCTAAAATTATAATGAGAAATTAATTTTAAACGCTTGTGTTGAATTGTTTTTATCTTCTTCTTCTTGTTTGCTTATGTTTTTTTTTGTTTGTTTTGTTTCCCAAGGTATGAAGTAACCAAATATATGTTTTTTTCTTTTCTTTACACGCTACACTCATCCAATTTGGTGCCTCCGGTTTAAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTAAATGGATATTTGTTTCGGTTTTGGTTTCAGAAGGGATGAGGTTTCATTTAATGTTTTTTGAAATTTTGCATACTGATCTTAGCAGTAATATTGGGATTTGTTAG]

[-] EMBL BX627423             [TCTTGTTTCACACATTCTTAGCTTTTGTTTTTATTACTCTAAAATTATAATGAGAAATTAATTTTAAACGCTTGTGTTGAATTGTTTTTATCTTCTTCTTCTTGTTTGCTTATGTTTTTTTTTGTTTGTTTTGTTTCCCAAGGTATGAAGTAACCAAATATATGTTTTTTTCTTTTCTTTACACGCTACACTCATCCAATTTGGTGCCTCCGGTTTAAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTAAATGGATATTTGTTTCGGTTTTGGTTTCAGAAGGGATGAGGTTTCATTTAATGTTTTTTGAAATTTTGCATACTGATCTTAGCAGTAATATTGGGATTTGTTAG]


>consensus_1934#1 TCTTGTTTCACACATTCTTAGCTTTTGTTTTTATTACTCTAAAATTATAATGAGAAATTA ATTTTAAACGCTTGTGTTGAATTGTTTTTATCTTCTTCTTCTTGTTTGCTTATGTTTTTT TTTGTTTGTTTTGTTTCCCAAGGTATGAAGTAACCAAATATATGTTTTTTTCTTTTCTTT ACACGCTACACTCATCCAATTTGGTGCCTCCGGTTTAAGACATTGTAGCGGGATATAATT GTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAG GGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAA TAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACC ATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGT CTTCTACTTTTAAATGGATATTTGTTTCGGTTTTGGTTTCAGAAGGGATGAGGTTTCATT TAATGTTTTTTGAAATTTTGCATACTGATCTTAGCAGTAATATTGGGATTTGTTAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1934#0      ------------------------------------------------------------
consensus_1934#1      TCTTGTTTCACACATTCTTAGCTTTTGTTTTTATTACTCTAAAATTATAATGAGAAATTA 60
                                                                                  

consensus_1934#0      ------------------------------------------------------------
consensus_1934#1      ATTTTAAACGCTTGTGTTGAATTGTTTTTATCTTCTTCTTCTTGTTTGCTTATGTTTTTT 120
                                                                                  

consensus_1934#0      ------------------------------------------------------------
consensus_1934#1      TTTGTTTGTTTTGTTTCCCAAGGTATGAAGTAACCAAATATATGTTTTTTTCTTTTCTTT 180
                                                                                  

consensus_1934#0      GAGGTTTACACTCATCCAATTTGGTGCCTCCGGTT--AGACATTGTAGCGGGATATAATT 58
consensus_1934#1      ACACGCTACACTCATCCAATTTGGTGCCTCCGGTTTAAGACATTGTAGCGGGATATAATT 240
                            *****************************  ***********************

consensus_1934#0      GTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAG 118
consensus_1934#1      GTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAG 300
                      ************************************************************

consensus_1934#0      GGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAA 178
consensus_1934#1      GGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAA 360
                      ************************************************************

consensus_1934#0      TAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACC 238
consensus_1934#1      TAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACC 420
                      ************************************************************

consensus_1934#0      ATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGT 298
consensus_1934#1      ATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGT 480
                      ************************************************************

consensus_1934#0      CTTCTACTTTTACACACTGGATATTTGGTTCTCGGTATCTNGGCTTTCACGCAAGCGGCA 358
consensus_1934#1      CTTCTACTTTTAAA---TGGATATTTG--TTTCGGT--TTTGGTTTCAGAAGGGATGAGG 533
                      ************ *   **********  * *****   * ** **          *   

consensus_1934#0      CTGAGCGCTTTTCACTTCTAAATGTNTCNCTCGAACACTNNN-GCAATACTGACTCTTAG 417
consensus_1934#1      TTTCATTTAATGTTTTTTGAAATTTTGCATACTGATCTTAGCAGTAATATTGGGATTT-G 592
                       *        *    **  **** *  *   *  *   *    * **** **    ** *

consensus_1934#0      CCAGGNNAAACTATCGGCGACTTCCGCTCCAGCACACTTCTCCCCATCTNTTCTTCACTT 477
consensus_1934#1      TTAG-------------------------------------------------------- 596
                        **                                                        

consensus_1934#0      CTCCTTCCTACCTACANGGCTCTGCTTGCTTGGGCGCCAGCCTCTNTCACACACGCACNT 537
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      NCACCACTCTCCACACGCTCTGCTCACTGCTNNNGGCGGACTGCGTTGCCTCCCCCCGCT 597
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      CTCCCCCCTTTTCTGCTGCGTCCCANCACACTGCTTGCACANCNCCTACTGCCCTCTACT 657
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      CCATTCNACCCTCACTACTACTCTCCCGCGCACACGCGNCANAACCTCNCNAACGCACGG 717
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      NTACNACAGGNCCCCTANACCCCTGGCCCCACATCNGGGGCATCTNCAAGGCNAACCAAC 777
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      CCCAACCCGCCCCGAGGGCTNGGTCAACCNAGACTACAGACAANTCAAGCANNANGGAGG 837
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      CACCCAAACNCGGACCCGNANCCACCCGCCCCTCTACCGNCACACTGGCGACCACACCNT 897
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      GGGCTGGCCAACCCCAATCACCACACACCCAGGCACACGGCGATCCCGGCTCCAGNCAGT 957
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      NAGGACCTCNGGACCCCCCTATCNCGCCACCTACGNGGCACTCCCTCGGCCGTAACCACC 1017
consensus_1934#1      ------------------------------------------------------------
                                                                                  

consensus_1934#0      CACANAAATAATAGCAAACACGGCACACATCACGN 1052
consensus_1934#1      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)