These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGGGCAGCACACACGCACCAAAAACACATACACACAGTGAAGTACCAGGCAAAATAATACTTCAGGTCGCAAACCCGGAAAATCAAAAACGGAAATTCCAGAACAAAGCAACCATCAACCAGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCACCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACCACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTAGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTCGGTGTGTCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCCAGCACCTCGAAAACGGTCCAAACTGCCGAGGGTTTAGTGTATCGGGATTCGTCCACCTTTCTAAAGGGCACACAATCGTCCAA] [+] EMBL BM585918 [CCGGGCAGCACACACGCACCAAAAACACATACACACAGTGAAGTACCAGGCAAAATAATACTTCAGGTCGCAAACCCGGAAAATCAAAAACGGAAATTCCAGAACAAAGCAACCATCAACCAGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCACCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACCACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTAGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTCGGTGTGTCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCCAGCACCTCGAAAACGGTCCAAACTGCCGAGGGTTTAGTGTATCGGGATTCGTCCACCTTTCTAAAGGGCACACAATCGTCCAA] consensusID : consensus_1939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCCCACGCGTCCGACCCGGAAAATCAAAAACGGAAATTTCAGAACAAAGCAACCATCAACCTGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCGCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACTACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTTGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTTGGTGTGTCCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCAAGCACCTCGAAAACGGTCCAAACTGCCGAGGGGTTAGTGTATTCGGGGATTCCGTCCACCTTTCTAAAGGGCACA] [+] EMBL BM583949 [CCGCCCACGCGTCCGACCCGGAAAATCAAAAACGGAAATTTCAGAACAAAGCAACCATCAACCTGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCGCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACTACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTTGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTTGGTGTGTCCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCAAGCACCTCGAAAACGGTCCAAACTGCCGAGGGGTTAGTGTATTCGGGGATTCCGTCCACCTTTCTAAAGGGCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1939#0 CCGGGCAGCACACACGCACCAAAAACACATACACACAGTGAAGTACCAGGCAAAATAATA 60 consensus_1939#1 ----------------------------------------------------------CC 2 consensus_1939#0 CTTCAGGTCGCAAACCCGGAAAATCAAAAACGGAAATTCCAGAACAAAGCAACCATCAAC 120 consensus_1939#1 GCCCACGCGTCCGACCCGGAAAATCAAAAACGGAAATTTCAGAACAAAGCAACCATCAAC 62 ** * * ************************* ********************* consensus_1939#0 CAGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACA 180 consensus_1939#1 CTGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACA 122 * ********************************************************** consensus_1939#0 TCAGCAGCAGCAGTGCACCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCC 240 consensus_1939#1 TCAGCAGCAGCAGTGCGCCC-GGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCC 181 **************** *** *************************************** consensus_1939#0 ACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCA 300 consensus_1939#1 ACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCA 241 ************************************************************ consensus_1939#0 TAGCTGCCTTCTCGCGTTCAACCACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTT 360 consensus_1939#1 TAGCTGCCTTCTCGCGTTCAACTACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTT 301 ********************** ************************************* consensus_1939#0 TCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTAGTGAAGTCAGTGTAAGGAGAGGGCAGAC 420 consensus_1939#1 TCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTTGTGAAGTCAGTGTAAGGAGAGGGCAGAC 361 ******************************* **************************** consensus_1939#0 ATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACA 480 consensus_1939#1 ATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACA 421 ************************************************************ consensus_1939#0 GAAGCGCAAGATGCTGCTCGCTCAAACGTTCGGTGTGTCC-TGCGTGGAAGACCTGAAGC 539 consensus_1939#1 GAAGCGCAAGATGCTGCTCGCTCAAACGTTTGGTGTGTCCCTGCGTGGAAGACCTGAAGC 481 ****************************** ********* ******************* consensus_1939#0 ACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAG 599 consensus_1939#1 ACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAG 541 ************************************************************ consensus_1939#0 CCAGCACCTCGAAAACGGTCCAAACTGCCGAGGGTTTAGTGTATC--GGGATTC-GTCCA 656 consensus_1939#1 CAAGCACCTCGAAAACGGTCCAAACTGCCGAGGGGTTAGTGTATTCGGGGATTCCGTCCA 601 * ******************************** ********* ******* ***** consensus_1939#0 CCTTTCTAAAGGGCACACAATCGTCCAA 684 consensus_1939#1 CCTTTCTAAAGGGCACA----------- 618 ***************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||