These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AGAATCCCCCGAGGGTNTGTGGAGGCGGAGGTGGAGGACGGTGATTGTTAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATTGCGAACGTTGCGACGATTGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGCGAAAATATAGATTTACGCCGCCAGCTAAAACACGCTACGCGTATGGATTCCTCCTGTCGGGACGGTCCATCCGCCACCGGGTACGGTTGTTGCCGAACGGGGCAACGGCGGGGATTCGCTCGATCGCCATTTGAACGGTATGCAAGAAACAAGNANGCAAAACGGGTTTTACCCGGGGCGGCCTGGGAACAAGGTTAGCAACCGGAAGGCCGAAGGGGACACCACGCNGAGGCTCCNGAACCACGGTATCCCCAAGGGACACCAAGGCTTCCGTGAAGTCCACAGGCCAGCAAGGCAACGCGCAGCAAGGCAAGGTACGCCNAGCCACGAGTGCCNCCAGGCAAGTGCAATTTATAGTGCCGAAGTGTAAACAGGACGGAACCCGNNGTAACAGAACCCCCGGGGGACAGCAAAACCCCAAACTGGGTGAATTGGGGANATCCCCCGGACATGTGGCGCCGGCG] [+] EMBL AL929944 [AGAATCCCCCGAGGGTNTGTGGAGGCGGAGGTGGAGGACGGTGATTGTTAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATTGCGAACGTTGCGACGATTGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGCGAAAATATAGATTTACGCCGCCAGCTAAAACACGCTACGCGTATGGATTCCTCCTGTCGGGACGGTCCATCCGCCACCGGGTACGGTTGTTGCCGAACGGGGCAACGGCGGGGATTCGCTCGATCGCCATTTGAACGGTATGCAAGAAACAAGNANGCAAAACGGGTTTTACCCGGGGCGGCCTGGGAACAAGGTTAGCAACCGGAAGGCCGAAGGGGACACCACGCNGAGGCTCCNGAACCACGGTATCCCCAAGGGACACCAAGGCTTCCGTGAAGTCCACAGGCCAGCAAGGCAACGCGCAGCAAGGCAAGGTACGCCNAGCCACGAGTGCCNCCAGGCAAGTGCAATTTATAGTGCCGAAGTGTAAACAGGACGGAACCCGNNGTAACAGAACCCCCGGGGGACAGCAAAACCCCAAACTGGGTGAATTGGGGANATCCCCCGGACATGTGGCGCCGGCG] consensusID : consensus_1941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [AATCCCCGAGGTTACGGCGAGGGTGTGTTGGTGGAGGAAGAGGTGGAGGCGGAGGTGGAGGAGGTGATTGTGAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATGGCGAACGTGGCGACGATGGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGGGAAAATATAGATTTACGCCGCCAGCTAGAACACGCTACGCGTAATGGATTCCTCCTGTTCGGCACGGTCATCGCCACGGTACGGTGTTGCCGACGGCCAAACGCGGCATCCGCTCGATCGCATGGGACGTAGCAGAACAGCAGCAACGTTTACCGGCGCTTGGACAGTAGCACGAGCGA] [+] EMBL AL694823 [AATCCCCGAGGTTACGGCGAGGGTGTGTTGGTGGAGGAAGAGGTGGAGGCGGAGGTGGAGGAGGTGATTGTGAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATGGCGAACGTGGCGACGATGGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGGGAAAATATAGATTTACGCCGCCAGCTAGAACACGCTACGCGTAATGGATTCCTCCTGTTCGGCACGGTCATCGCCACGGTACGGTGTTGCCGACGGCCAAACGCGGCATCCGCTCGATCGCATGGGACGTAGCAGAACAGCAGCAACGTTTACCGGCGCTTGGACAGTAGCACGAGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1941#0 -----------------------AGAATCCCCCGAGGGTNTG-TGGAGGCGGAGGTGGAG 36 consensus_1941#1 AATCCCCGAGGTTACGGCGAGGGTGTGTTGGTGGAGGAAGAGGTGGAGGCGGAGGTGGAG 60 * * **** * ***************** consensus_1941#0 GACGGTGATTGTTAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATTGCGAACGTTGC 96 consensus_1941#1 GA-GGTGATTGTGAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATGGCGAACGTGGC 119 ** ********* *********************************** ******** ** consensus_1941#0 GACGATTGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAG 156 consensus_1941#1 GACGATGGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAG 179 ****** ***************************************************** consensus_1941#0 CGCGAAAATATAGATTTACGCCGCCAGCTAAAACACGCTACGCGTA-TGGATTCCTCCTG 215 consensus_1941#1 CGGGAAAATATAGATTTACGCCGCCAGCTAGAACACGCTACGCGTAATGGATTCCTCCTG 239 ** *************************** *************** ************* consensus_1941#0 T-CGGGACGGTCCATCCGCCACCGGGTACGGTTGTTGCCGAACGGGGCAACGGCGGGGAT 274 consensus_1941#1 TTCGGCACGGTC--ATCGCCAC--GGTACGGT-GTTGCCGA--CGGCCAAACGCGGC-AT 291 * *** ****** ****** ******** ******** ** *** **** ** consensus_1941#0 TCGCTCGATCGCCATTTGAACGGTATGCAAGAAACAAGNANGCAAAACGGGTTTTACCCG 334 consensus_1941#1 CCGCTCGATCGC-------ATGGGACGTAGCAGAACAGCAGC---AACG---TTTACC-- 336 *********** * ** * * * * * ** * **** ****** consensus_1941#0 GGGCGGCCTGGGAACAAGGTTAGCAACCGGAAGGCCGAAGGGGACACCACGCNGAGGCTC 394 consensus_1941#1 -GGCGCTTGGACAGTAGCACGAGCGA---------------------------------- 361 **** * * * *** * consensus_1941#0 CNGAACCACGGTATCCCCAAGGGACACCAAGGCTTCCGTGAAGTCCACAGGCCAGCAAGG 454 consensus_1941#1 ------------------------------------------------------------ consensus_1941#0 CAACGCGCAGCAAGGCAAGGTACGCCNAGCCACGAGTGCCNCCAGGCAAGTGCAATTTAT 514 consensus_1941#1 ------------------------------------------------------------ consensus_1941#0 AGTGCCGAAGTGTAAACAGGACGGAACCCGNNGTAACAGAACCCCCGGGGGACAGCAAAA 574 consensus_1941#1 ------------------------------------------------------------ consensus_1941#0 CCCCAAACTGGGTGAATTGGGGANATCCCCCGGACATGTGGCGCCGGCG 623 consensus_1941#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||