These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [AGGAATTGCGAGTCGATTGAAGAAAGTGGGCAGACCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCAGGAAGAAAAGAGCGATAAAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACCATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGTAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTATCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCAACATACCGTGCCCACCGCACTAAGTTTGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTTGTTGCTGTGGATCCAAAAGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGTAGTGCATTGCGAAGAGGACGACTACGGCAGCAAATACATCATCGAAGAGATAGTAGACCAGGCTGCAGTACAACCAGAAACACAGGACAAAGGGATGCATATAGAAAGTATAACAACGTCCAGCAGCAGCAGCACCAGCAGTAGTAGCAGCAGTAGTAGCAGCAGCACAACAACAACGCCTCTCATCGTTCAAGCTGTTCAGGGACAGGTGGATCGGTCGTGGTGGCCGCAGCCGGACCGGTGTAAGCTCTTCAGTCAGTGCGTCGGTATGCGGATGGTAAACTTCTCGCTGCAGCAGCAAAGCTTCGCCGAAAAGATGATCAA] [+] EMBL BX621892 [AGGAATTGCGAGTCGATTGAAGAAAGTGGGCAGACCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCAGGAAGAAAAGAGCGATAAAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACCATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGTAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTATCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCAACATACCGTGCCCACCGCACTAAGTTTGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTTGTTGCTGTGGATCCAAAAGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGTAGTGCATTGCGAAGAGGACGACTACGGCAGCAAATACATCATCGAAGAGATAGTAGACCAGGCTGCAGTACAACCAGAAACACAGGACAAAGGGATGCATATAGAAAGTATAACAACGTCCAGCAGCAGCAGCACCAGCAGTAGTAGCAGCAGTAGTAGCAGCAGCACAACAACAACGCCTCTCATCGTTCAAGCTGTTCAGGGACAGGTGGATCGGTCGTGGTGGCCGCAGCCGGACCGGTGTAAGCTCTTCAGTCAGTGCGTCGGTATGCGGATGGTAAACTTCTCGCTGCAGCAGCAAAGCTTCGCCGAAAAGATGATCAA] consensusID : consensus_1946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCGAGGTTAAAACAGAGGAAGGAATAGCGAGTCGATTGAAGAAAGTGGGCAGGCCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCCGGAAGAAAAGAGCGATAGAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACGATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGCAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTTTCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCTACATACCGTGCCCACCGCACTAAGTTTGGTAATGAGGTTGAAAATGGCACAGGAAGAGTGTCCCTGGAGTGCTAATAATCGTTCTTTTTTTTAATGCCAGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTGTTGCTGTGGATCCAAAATTGCAGGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGAAGTGCATGGTGAAGAGGA] [+] EMBL AL694850 [CCGAGGTTAAAACAGAGGAAGGAATAGCGAGTCGATTGAAGAAAGTGGGCAGGCCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCCGGAAGAAAAGAGCGATAGAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACGATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGCAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTTTCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCTACATACCGTGCCCACCGCACTAAGTTTGGTAATGAGGTTGAAAATGGCACAGGAAGAGTGTCCCTGGAGTGCTAATAATCGTTCTTTTTTTTAATGCCAGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTGTTGCTGTGGATCCAAAATTGCAGGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGAAGTGCATGGTGAAGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1946#0 -------------------AGGAATTGCGAGTCGATTGAAGAAAGTGGGCAGACCCAGAA 41 consensus_1946#1 CCGAGGTTAAAACAGAGGAAGGAATAGCGAGTCGATTGAAGAAAGTGGGCAGGCCCAGAA 60 ****** ************************** ******* consensus_1946#0 AATCGACACTCTCTTTAAGCATCGATTATGAGCAGGAAGAAAAGAGCGATAAAAAAATTA 101 consensus_1946#1 AATCGACACTCTCTTTAAGCATCGATTATGAGCCGGAAGAAAAGAGCGATAGAAAAATTA 120 ********************************* ***************** ******** consensus_1946#0 GGCGCTTTCATAAGAATGTCTTAACGAAAGAGACCATTTTAAAATTCATCGCCGTTATGG 161 consensus_1946#1 GGCGCTTTCATAAGAATGTCTTAACGAAAGAGACGATTTTAAAATTCATCGCCGTTATGG 180 ********************************** ************************* consensus_1946#0 AGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGTA 221 consensus_1946#1 AGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGCA 240 ********************************************************** * consensus_1946#0 AGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTATCCGCTGCTAAGCTGCGGA 281 consensus_1946#1 AGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTTTCCGCTGCTAAGCTGCGGA 300 **************************************** ******************* consensus_1946#0 GCAAGTGGGCAGTCCTAAAATCAACATACCGTGCCCACCGCACTAAGTTTG--------- 332 consensus_1946#1 GCAAGTGGGCAGTCCTAAAATCTACATACCGTGCCCACCGCACTAAGTTTGGTAATGAGG 360 ********************** **************************** consensus_1946#0 ------------------------------------------------------------ consensus_1946#1 TTGAAAATGGCACAGGAAGAGTGTCCCTGGAGTGCTAATAATCGTTCTTTTTTTTAATGC 420 consensus_1946#0 ---ACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGT 389 consensus_1946#1 CAGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGT 480 ********************************************************* consensus_1946#0 TACTCGATAAGAAGCCATCGCCTGCTTTTGTTGCTGTGGATCCAAAA------GATCATG 443 consensus_1946#1 TACTCGATAAGAAGCCATCGCCTGCTTT-GTTGCTGTGGATCCAAAATTGCAGGATCATG 539 **************************** ****************** ******* consensus_1946#0 CATCTGAATTGAACGATGAAACGAAATCCGAGGTAGTGCATTGCGAAGAGGACGACTACG 503 consensus_1946#1 CATCTGAATTGAACGATGAAACGAAATCCGAGGAAGTGCATGGTGAAGAGGA-------- 591 ********************************* ******* * ******** consensus_1946#0 GCAGCAAATACATCATCGAAGAGATAGTAGACCAGGCTGCAGTACAACCAGAAACACAGG 563 consensus_1946#1 ------------------------------------------------------------ consensus_1946#0 ACAAAGGGATGCATATAGAAAGTATAACAACGTCCAGCAGCAGCAGCACCAGCAGTAGTA 623 consensus_1946#1 ------------------------------------------------------------ consensus_1946#0 GCAGCAGTAGTAGCAGCAGCACAACAACAACGCCTCTCATCGTTCAAGCTGTTCAGGGAC 683 consensus_1946#1 ------------------------------------------------------------ consensus_1946#0 AGGTGGATCGGTCGTGGTGGCCGCAGCCGGACCGGTGTAAGCTCTTCAGTCAGTGCGTCG 743 consensus_1946#1 ------------------------------------------------------------ consensus_1946#0 GTATGCGGATGGTAAACTTCTCGCTGCAGCAGCAAAGCTTCGCCGAAAAGATGATCAA 801 consensus_1946#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||