These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [CGCGTTTATAACTGTGTTCCGGTTAGCTAAAACTGTTCATCATTNTGTAACTAACTGTGATTATTCACCCGTCTGGCCCCAACCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTACGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAACAGAATAGGTCACTAGCTAGCAATGCAGCCAATATAATATACATCGTACGCAGTAGCTATNCCCATAAATATACAGACNAGATACATAGGTNATNNNACATACCCATNTGGCCCTTCACGTATCAGTCATCNTCATCAGTTCCCGCACTATCTATCCAGTCTCCCACAAAAACNTAGCTGCATCAGTTCCTCAATCACAAGCAAACACTCCCGNTAGGTTGCCACTTTCANACCCTCCCATCTGCTCCCTGGTCTCAAGCATCACAAAAGAGGGTTCAGCANAAGGTTTCATNNCAAAAAGTNNGCNGGTCACCACGCCNCNCCACCCCCCCATCACCCCCCANNCCAGGGACNCNCANNAAACAAGGCANGCCCCACNCCAGCCNCCCNACAGCCANCCCACCNNCACCCNNGCCAAGGGGNACACNCATCCCAGCACCACCCANGCCAACGCAACACACGCACCCCCATCCCCACCCGCCACACACCCGCCAAANANGCCNCCCCNCGCNCACCATNCNNCCAACCCATCACACCAAGGAGGGGCCCGNCCCC] [+] EMBL AL694871 [CGCGTTTATAACTGTGTTCCGGTTAGCTAAAACTGTTCATCATTNTGTAACTAACTGTGATTATTCACCCGTCTGGCCCCAACCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTACGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAACAGAATAGGTCACTAGCTAGCAATGCAGCCAATATAATATACATCGTACGCAGTAGCTATNCCCATAAATATACAGACNAGATACATAGGTNATNNNACATACCCATNTGGCCCTTCACGTATCAGTCATCNTCATCAGTTCCCGCACTATCTATCCAGTCTCCCACAAAAACNTAGCTGCATCAGTTCCTCAATCACAAGCAAACACTCCCGNTAGGTTGCCACTTTCANACCCTCCCATCTGCTCCCTGGTCTCAAGCATCACAAAAGAGGGTTCAGCANAAGGTTTCATNNCAAAAAGTNNGCNGGTCACCACGCCNCNCCACCCCCCCATCACCCCCCANNCCAGGGACNCNCANNAAACAAGGCANGCCCCACNCCAGCCNCCCNACAGCCANCCCACCNNCACCCNNGCCAAGGGGNACACNCATCCCAGCACCACCCANGCCAACGCAACACACGCACCCCCATCCCCACCCGCCACACACCCGCCAAANANGCCNCCCCNCGCNCACCATNCNNCCAACCCATCACACCAAGGAGGGGCCCGNCCCC] consensusID : consensus_1951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [GTGTTCCGGTTAGATAAAACTGTTCATCAATTGTAACTAACTGTGATTATTCACCCTCTGCCCCCAACCCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTCGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAAAGAATGGTACTGCTGCAATGCGCAATATAATATCATCGTCGAGTGCTTTCCCATAATTCAGACAGATCATGGTTTACATCCCTTGCCCTTCACGTTAGTCATCTCTCGTTCGATTTTCGTCTCACAAACTGTATAGTTCTAGAAGAAACTCGTGTGCATTAACTCATTGTCTGTTAGATAAAGGGTTAGAAGTTATTAAGTGCGTAAGAAATTTATTTTATGAATAGAGAGCTAGAGAAAAAGAGAGAAAGAGGAAAATAGAAAGAGAAAGAGATAAAGAAACGAAAGCAAAAATCTAGCTTTAGGGCACTATGTTGTGCACTCAACGCATTCGTTCGTCTCTTGCTAGCGCTCGTGGTTCTTCCTAGATTTTGAATGCAGTTTTTGTTCGAAGCTACAAATCGATTGTTATTCTTTTCTACGTGCTGCTTTCAATTGGGCTGGCAGAGTAGTGCTTGCTCGCACGAAATGCAGCATAGTATTAAGTAACTCAGGAGCTTGTTTACATCAGANGCCTGTATGTTAGGATATTGAAATCGAAAGAAAACACGAAACAT] [+] EMBL BX621483 [GTGTTCCGGTTAGATAAAACTGTTCATCAATTGTAACTAACTGTGATTATTCACCCTCTGCCCCCAACCCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTCGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAAAGAATGGTACTGCTGCAATGCGCAATATAATATCATCGTCGAGTGCTTTCCCATAATTCAGACAGATCATGGTTTACATCCCTTGCCCTTCACGTTAGTCATCTCTCGTTCGATTTTCGTCTCACAAACTGTATAGTTCTAGAAGAAACTCGTGTGCATTAACTCATTGTCTGTTAGATAAAGGGTTAGAAGTTATTAAGTGCGTAAGAAATTTATTTTATGAATAGAGAGCTAGAGAAAAAGAGAGAAAGAGGAAAATAGAAAGAGAAAGAGATAAAGAAACGAAAGCAAAAATCTAGCTTTAGGGCACTATGTTGTGCACTCAACGCATTCGTTCGTCTCTTGCTAGCGCTCGTGGTTCTTCCTAGATTTTGAATGCAGTTTTTGTTCGAAGCTACAAATCGATTGTTATTCTTTTCTACGTGCTGCTTTCAATTGGGCTGGCAGAGTAGTGCTTGCTCGCACGAAATGCAGCATAGTATTAAGTAACTCAGGAGCTTGTTTACATCAGANGCCTGTATGTTAGGATATTGAAATCGAAAGAAAACACGAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1951#0 CGCGTTTATAACTGTGTTCCGGTTAGCTAAAACTGTTCATCATTNTGTAACTAACTGTGA 60 consensus_1951#1 -------------GTGTTCCGGTTAGATAAAACTGTTCATCAATT-GTAACTAACTGTGA 46 ************* *************** * ************** consensus_1951#0 TTATTCACCCGTCTGGCCCCAACCC-TCCTAACCCTAGTTGTGATAGATCCCATGTTCCC 119 consensus_1951#1 TTATTCACCC-TCTGCCCCCAACCCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCC 105 ********** **** ********* ********************************** consensus_1951#0 TACGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAACA 179 consensus_1951#1 T-CGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAA-A 163 * ******************************************************** * consensus_1951#0 GAATAGGTCACTAGCTAGCAATGCAGCCAATATAATATACATCGTACGCAGTAGCTATNC 239 consensus_1951#1 GAATGG--TACT-GCT-GCAATGCG--CAATATAATAT-CATCGT---CGAGTGCT-TTC 212 **** * *** *** ******* *********** ****** * *** * * consensus_1951#0 CCATAAATATACAGACNAGATACATAGGTNATNNNACATACCCATNTGGCCCTTCACGTA 299 consensus_1951#1 CCATAA---TTCAGACA-GAT-CATGGTTTACATCCCTTGCCCTTCACGTTAGTCATCTC 267 ****** * ***** *** *** * * * * * *** * * *** * consensus_1951#0 TCAGTCATCNTCATCAGTTCCCGCACTATCTATCCAGTCTCCCACAAAAACNTAGCTGCA 359 consensus_1951#1 TCGTTCGATTT------TCGTCTCACAAACTGTATAGT-TCTAGAAGAAACTCGTGTGCA 320 ** ** * * * *** * ** * *** ** * **** **** consensus_1951#0 TCAGTTCCTCAATCACAAGC--AAACACTCCCGNTAGGTTGCCACTTTCANACCCTCCCA 417 consensus_1951#1 TTAACTCATTGTCTGTTAGATAAAGGGTTAGAAGTTATTAAGTGCGTAAGAAATTTATTT 380 * * ** * ** ** * * * * * * * consensus_1951#0 TCTGCTCCCTGGTCTCAAGCATCACAAA-AGAGGGTTCAGCANAAGGTTTCATNNCAAAA 476 consensus_1951#1 TATGAATAGAGAGCTAGAGAAAAAGAGAGAAAGAGGAAAATAGAAAGAGAAAGAGATAAA 440 * ** * ** ** * * * * * ** * * * ** * * *** consensus_1951#0 AGTNNGCNGGTCACCACGCCNCNCCACCCCCCCAT------CACCCCCCANNCCAGGGAC 530 consensus_1951#1 GAAACGAAAGCAAAAATCTAGCTTTAGGGCACTATGTTGTGCACTCAACGCATTCGTTCG 500 * * * * * * * * ** *** * * * consensus_1951#0 NCNCANNAAACAAGGCANGCCCCACNCCAGCCNCCCNA--CAGCCANCCCACCNNCACCC 588 consensus_1951#1 TCTCTTGCTAGCGCTCGTGGTTCTTCCTAGATTTTGAATGCAGTTTTTGTTCGAAGCTAC 560 * * * * * * * ** * *** * * consensus_1951#0 NNGCCAAGGGGNACACNCATCCCAGCACCACCCANGCCAACGC-AACACACGCACCCCCA 647 consensus_1951#1 AAATCGATTGTTATTCTTTTCTACGTGCTGCTTTCAATTGGGCTGGCAGAGTAGTGCTTG 620 * * * * * ** * * * ** ** * * consensus_1951#0 TCCCCACC---CGCCACACACCCGCCAAANANGCCNCCCCNCGCNCACC----ATNCNNC 700 consensus_1951#1 CTCGCACGAAATGCAGCATAGTATTAAGTAACTCAGGAGCTTGTTTACATCAGANGCCTG 680 * *** ** ** * * * * * * ** * * consensus_1951#0 CAACCCATCACACCAAGGAGGGGCCCGNCCCC------- 732 consensus_1951#1 TATGTTAGGATATTGAAATCGAAAGAAAACACGAAACAT 719 * * * * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||