These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [GCAAGAATCGGCACNTTGGGCAAGCGCGACAGGAGAAGCAGAAGCAAAAAACGACGGTGGATGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGTTGCAGTACGCTTTGGAAAGTCCCCGAAGCGTTCATCCGTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACGCCGATCGTATCCGACTGGGAACAGCCATCGGAACCGGAAGAGCTCACCAAGCGACGTACCATTTTCCCCGAGATTACGCAGCAAAAAACGGAAGATGTAAAGTCGATTCTGAAAACGCCAAAGGTTAAGAACGGCCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACACCGGAAACCCGCTGTCGGCACACATCCCGTATCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAAATCGAGCACATCGACAACCTGGCCACCGAGTCGAAACCAGTGGAAGACGAAACCATTGCTGGCCAAGCAAATTTAACGCGAGAGGAGAAGGTTCAACCATGTTCTGTCGGTGAGGATGACGCTATTCCCAAGCACTTCCACCAGCAATACANCCTCTCCGTCGTAGCCGTCGCAACTCGGTACGAATCATAGAGCCAGCGGTGGTCGAGCCGAACGACGATCCAGC] [+] EMBL BX467186 [GCAAGAATCGGCACNTTGGGCAAGCGCGACAGGAGAAGCAGAAGCAAAAAACGACGGTGGATGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGTTGCAGTACGCTTTGGAAAGTCCCCGAAGCGTTCATCCGTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACGCCGATCGTATCCGACTGGGAACAGCCATCGGAACCGGAAGAGCTCACCAAGCGACGTACCATTTTCCCCGAGATTACGCAGCAAAAAACGGAAGATGTAAAGTCGATTCTGAAAACGCCAAAGGTTAAGAACGGCCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACACCGGAAACCCGCTGTCGGCACACATCCCGTATCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAAATCGAGCACATCGACAACCTGGCCACCGAGTCGAAACCAGTGGAAGACGAAACCATTGCTGGCCAAGCAAATTTAACGCGAGAGGAGAAGGTTCAACCATGTTCTGTCGGTGAGGATGACGCTATTCCCAAGCACTTCCACCAGCAATACANCCTCTCCGTCGTAGCCGTCGCAACTCGGTACGAATCATAGAGCCAGCGGTGGTCGAGCCGAACGACGATCCAGC] consensusID : consensus_1954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CCGGCCAGCGGCTGGCACCAAAGCGTCGTCCTCCGTCATTGCGGATCTGATACGCAAAGCGCGACAGGAGAAGCAAAAGCAAAAAACGACGGTGGAAGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGAAAAGCGTGCAGTACGCTTCGGAAAGTCCCCGAAACGTTCCTCCCTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACACCGACCGTATTCCACTGGGAACAGCCATCGAAACCGGAAGAGCTTTCCAAGCGACGTACCATTTTTCCCGATATCACTCTGCAGAGGACGGAAGAGGTAAAGTCGATACTGAAAACGCCAAAGGTCAAGAACGACCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACGCCGCAAACCCGTCGCCGGCATACGTCGCGCTCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAGATCGAGCACATCGACAATCTGGCCGCCCGGACACCGTCCCGGCTGGATATGGAGATACAGAAGCGGCTCAGACATTCGCAGCTGCTGAATGCATCTGCCGTGTCCGTTCCGGCCAGCGAAAGCAACCAACAGTCGGACGACAGCGTGGACACAGACGATGCGA] [+] EMBL BM603120 [CCGGCCAGCGGCTGGCACCAAAGCGTCGTCCTCCGTCATTGCGGATCTGATACGCAAAGCGCGACAGGAGAAGCAAAAGCAAAAAACGACGGTGGAAGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGAAAAGCGTGCAGTACGCTTCGGAAAGTCCCCGAAACGTTCCTCCCTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACACCGACCGTATTCCACTGGGAACAGCCATCGAAACCGGAAGAGCTTTCCAAGCGACGTACCATTTTTCCCGATATCACTCTGCAGAGGACGGAAGAGGTAAAGTCGATACTGAAAACGCCAAAGGTCAAGAACGACCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACGCCGCAAACCCGTCGCCGGCATACGTCGCGCTCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAGATCGAGCACATCGACAATCTGGCCGCCCGGACACCGTCCCGGCTGGATATGGAGATACAGAAGCGGCTCAGACATTCGCAGCTGCTGAATGCATCTGCCGTGTCCGTTCCGGCCAGCGAAAGCAACCAACAGTCGGACGACAGCGTGGACACAGACGATGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1954#0 ----------------------------------GCAAGAATCGGCACNTTGGGCAA-GC 25 consensus_1954#1 CCGGCCAGCGGCTGGCACCAAAGCGTCGTCCTCCGTCATTGCGGATCTGATACGCAAAGC 60 * * * * **** ** consensus_1954#0 GCGACAGGAGAAGCAGAAGCAAAAAACGACGGTGGATGATTTGGAGCCGCTGAAAGAAAC 85 consensus_1954#1 GCGACAGGAGAAGCAAAAGCAAAAAACGACGGTGGAAGATTTGGAGCCGCTGAAAGAAAC 120 *************** ******************** *********************** consensus_1954#0 GGTCACCGTTGTAACGACGCCGGT------TGCAGTACGCTTTGGAAAGTCCCCGAAGCG 139 consensus_1954#1 GGTCACCGTTGTAACGACGCCGGAAAAGCGTGCAGTACGCTTCGGAAAGTCCCCGAAACG 180 *********************** ************ ************** ** consensus_1954#0 TTCATCCGTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACGCCGATCGTATCCGA 199 consensus_1954#1 TTCCTCCCTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACACCGACCGTATTCCA 240 *** *** ************************************* **** ***** * * consensus_1954#0 CTGGGAACAGCCATCGGAACCGGAAGAGCTCACCAAGCGACGTACCATTTTCCCCGAGAT 259 consensus_1954#1 CTGGGAACAGCCATCGAAACCGGAAGAGCTTTCCAAGCGACGTACCATTTTTCCCGATAT 300 **************** ************* ******************* ***** ** consensus_1954#0 TACGCAGCAAAAAACGGAAGATGTAAAGTCGATTCTGAAAACGCCAAAGGTTAAGAACGG 319 consensus_1954#1 CACTCTGCAGAGGACGGAAGAGGTAAAGTCGATACTGAAAACGCCAAAGGTCAAGAACGA 360 ** * *** * ******** *********** ***************** ******* consensus_1954#0 CCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACACCGGAAACCCGCTG 379 consensus_1954#1 CCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACGCCGCAAACCCGTCG 420 ********************************************* *** ******* * consensus_1954#0 TCGGCACACATCCCGTATCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACG 439 consensus_1954#1 CCGGCATACGTCGCGC-TCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACG 479 ***** ** ** ** ******************************************* consensus_1954#0 AGCTCGAAATCGAGCACATCGACAACCTGGCCACCGAGTCGAAA--CCAGTGGAAGACGA 497 consensus_1954#1 AGCTCGAGATCGAGCACATCGACAATCTGGCCGCCCGGACACCGTCCCGGCTGGATATGG 539 ******* ***************** ****** ** * * ** * * * * * consensus_1954#0 AACCATTGCTGGCCAAGCAAATTTAACGCGAGAGGAGAAGGT-TCAACCATGTTCTGTCG 556 consensus_1954#1 AGATACAGA-AGCGGCTCAGACATT-CGCAGCTGCTGAATGCATCTGCCGTGTCCGTTCC 597 * * * ** ** * * *** * *** * ** ** *** * ** consensus_1954#0 GTGAGGATGACGCTATTCCCAAGCACTTCCACCAGCAATACANCCTCTCCGTCGTAGCCG 616 consensus_1954#1 G----------GCCAG---CGAAAGCAACCAACAGTCGGACGACAGCGTGGACACAGACG 644 * ** * * * * *** *** ** * * * * ** ** consensus_1954#0 TCGCAACTCGGTACGAATCATAGAGCCAGCGGTGGTCGAGCCGAACGACGATCCAGC 673 consensus_1954#1 ATGCGA--------------------------------------------------- 650 ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||